Package: rMAT
Type: Package
Title: R implementation from MAT program to normalize and analyze
        tiling arrays and ChIP-chip data.
Version: 3.28.0
Author: Charles Cheung and Arnaud Droit and Raphael Gottardo
Maintainer: Arnaud Droit <arnaud.droit@crchuq.ulaval.ca> and Raphael Gottardo <rgottard@fhcrc.org>
Description: This package is an R version of the package MAT and contains functions to parse and merge Affymetrix BPMAP and CEL tiling array files (using C++ based Fusion SDK and Bioconductor package affxparser), normalize tiling arrays using sequence specific models, detect enriched regions from ChIP-chip experiments. Note: users should have GSL and GenomeGraphs installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'. Snow Leopard users can take advantage of increase speed with Grand Central Dispatch!
Year: 2009.
License: Artistic-2.0
Depends: R(>= 2.9.0), BiocGenerics (>= 0.1.3), IRanges (>= 1.13.10),
        Biobase (>= 2.15.1), affxparser
Imports: stats, methods, BiocGenerics, IRanges, Biobase, affxparser,
        stats4
Suggests: GenomeGraphs, rtracklayer
SystemRequirements: GSL (GNU Scientific Library)
biocViews: Microarray, Preprocessing
URL: http://www.rglab.org
NeedsCompilation: yes
Packaged: 2017-10-30 22:54:02 UTC; biocbuild
