Package: scoreInvHap
Title: Get inversion status in predefined regions
Version: 1.0.0
Authors@R: c(person("Carlos", "Ruiz", , "carlos.ruiz@isglobal.org", role = c("aut", "cre")),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = "aut"))
Description: scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as
 input and requires the following information about the inversion: genotype frequencies in the different
 haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the
 reference. The package include this data for two well known inversions (8p23 and 17q21.31) and for 
 two additional regions.
Depends: R (>= 3.4.0)
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Imports: Biostrings, methods, snpStats, VariantAnnotation,
        GenomicRanges, BiocParallel, graphics, SummarizedExperiment
Suggests: testthat, knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
biocViews: SNP, Genetics, GenomicVariation
NeedsCompilation: no
Packaged: 2017-10-31 01:26:28 UTC; biocbuild
Author: Carlos Ruiz [aut, cre],
  Juan R. Gonzalez [aut]
Maintainer: Carlos Ruiz <carlos.ruiz@isglobal.org>
