R (>= 3.3.0), VariantAnnotation, AnnotationHub,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Mmusculus.UCSC.mm10.ensGene, org.Hs.eg.db, org.Mm.eg.db,
Homo.sapiens, BSgenome.Hsapiens.UCSC.hg19, biomaRt, BSgenome,
TxDb.Athaliana.BioMart.plantsmart22
R (>= 3.3.0), BiocStyle, ChIPpeakAnno, Gviz, Rsamtools,
Rsubread, TxDb.Mmusculus.UCSC.mm10.knownGene, csaw, edgeR,
knitr, locfit, org.Mm.eg.db, rtracklayer, statmod
R (>= 3.4.0), EGSEA (>= 1.5.2), limma, edgeR, illuminaio
R (>= 3.3.0), BSgenome.Scerevisiae.UCSC.sacCer3, Biostrings,
GenomicFeatures, MotifDb, S4Vectors,
TxDb.Scerevisiae.UCSC.sacCer3.sgdGene, motifStack,
org.Sc.sgd.db, seqLogo
R (>= 3.3.0), Glimma (>= 1.1.9), limma, edgeR, Mus.musculus
R (>= 3.3.0), BiocStyle, airway, Rsamtools, GenomicFeatures,
GenomicAlignments, BiocParallel, magrittr, DESeq2, vsn, dplyr,
ggplot2, pheatmap, RColorBrewer, PoiClaClu, ggbeeswarm,
genefilter, AnnotationDbi, org.Hs.eg.db, ReportingTools, Gviz,
sva, fission,
R (>= 3.3.0), GenomicRanges, GenomicAlignments, Biostrings,
Rsamtools, ShortRead, BiocParallel, rtracklayer,
VariantAnnotation, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
RNAseqData.HNRNPC.bam.chr14
R (>= 3.3.0), VariantAnnotation, cgdv17, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
PolyPhen.Hsapiens.dbSNP131