Package: BgeeCall
Type: Package
Title: BgeeCall, a R package for automatic RNA-Seq present/absent gene
        expression calls generation
Version: 1.0.1
Date: 2019-03
Authors@R: 
	c(person("Julien", "Wollbrett", 
		role = c("aut", "cre"), 
		email = "julien.wollbrett@unil.ch"),
    person("Julien", "Roux", role = "aut"),
    person("Sara", "Fonseca Costa", role = "ctb"),
    person("Marc", "Robinson Rechavi", role = "ctb"),
    person("Frederic", "Bastian", role = "aut"))
Maintainer: Julien Wollbrett <julien.wollbrett@unil.ch>
Description: Reference intergenic regions are generated by the Bgee RNA-Seq pipeliene. These intergenic regions are used 
    to generate all Bgee RNA-Seq present/absent expression calls. This package now allows to generate your own present/absent 
    calls using both these intergenic regions and the expertise of Bgee, as long as your species is present in Bgee. The 
    threshold of present/absent expression is no longer arbitrary defined but is calculated based on expression of all RNA-Seq 
    libraries integrated in Bgee.
Depends: R (>= 3.6.0)
Imports: GenomicFeatures, rhdf5, tximport, Biostrings, rtracklayer,
        BgeeDB, biomaRt, methods, grDevices, graphics, stats, utils
License: GPL-3
URL: https://github.com/BgeeDB/BgeeCall
BugReports: https://github.com/BgeeDB/BgeeCall/issues
VignetteBuilder: knitr
biocViews: Workflow, GeneExpressionWorkflow
Suggests: knitr, testthat, rmarkdown, AnnotationHub, httr
RoxygenNote: 6.1.1
Encoding: UTF-8
NeedsCompilation: no
SystemRequirements: kallisto
git_url: https://git.bioconductor.org/packages/BgeeCall
git_branch: RELEASE_3_9
git_last_commit: 558ea29
git_last_commit_date: 2019-10-14
Date/Publication: 2019-10-14
Packaged: 2019-10-14 16:31:51 UTC; biocbuild
Author: Julien Wollbrett [aut, cre],
  Julien Roux [aut],
  Sara Fonseca Costa [ctb],
  Marc Robinson Rechavi [ctb],
  Frederic Bastian [aut]
