Package: CAGEWorkflow
Type: Package
Title: A step-by-step guide to analyzing CAGE data using R/Bioconductor
Version: 1.0.0
Authors@R: person("Malte", "Thodberg", email = "maltethodberg@gmail.com", role = c("aut", "cre"))
Description: Workflow for analyzing Cap Analysis of Gene Expression (CAGE) data using R/Bioconductor.
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
Depends: R (>= 3.6.0), nanotubes
Suggests: knitr, rmarkdown, BiocWorkflowTools, pheatmap, ggseqlogo,
        viridis, magrittr, ggforce, ggthemes, tidyverse, dplyr,
        CAGEfightR, GenomicRanges, SummarizedExperiment,
        GenomicFeatures, BiocParallel, InteractionSet, Gviz, DESeq2,
        limma, edgeR, statmod, BiasedUrn, sva, TFBSTools, motifmatchr,
        pathview, BSgenome.Mmusculus.UCSC.mm9,
        TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, JASPAR2016,
        png
VignetteBuilder: knitr
Workflow: true
RoxygenNote: 6.1.1
biocViews: GeneExpressionWorkflow, AnnotationWorkflow
git_url: https://git.bioconductor.org/packages/CAGEWorkflow
git_branch: RELEASE_3_9
git_last_commit: c1430f8
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-03
NeedsCompilation: no
Packaged: 2019-05-03 16:30:28 UTC; biocbuild
Author: Malte Thodberg [aut, cre]
Maintainer: Malte Thodberg <maltethodberg@gmail.com>
