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| 129DUO_Fe_Cy3 | Example dataset in MAGEML-format |
| 129Duo_Fe_Cy5 | Example dataset in MAGEML-format |
| 129L_Fe_cy3 | Example dataset in MAGEML-format |
| 129L_Fe_cy5 | Example dataset in MAGEML-format |
| 230MM-mod | example dataset in MAGEML-format |
| 235MM-mod | example dataset in MAGEML-format |
| A-MEXP-5.xml | Example dataset in MAGEML-format |
| arrayDesign | ArrayDesign class. |
| arrayDesign-class | ArrayDesign class. |
| ArrayDesignHandler | Event handler for XML parser |
| B6_Fe-def_Cy3 | Example dataset in MAGEML-format |
| B6_Fe-def_Cy5 | Example dataset in MAGEML-format |
| bioAssayData | BioAssayData class. |
| bioAssayData-class | BioAssayData class. |
| BioAssayDataHandler | Event handler for XML parser |
| bioSample | BioSample class. |
| bioSample-class | BioSample class. |
| bioSequence | BioSequence class. |
| bioSequence-class | BioSequence class. |
| BioSequenceHandler | Event handler for XML parser |
| C282YDuo_Cy5 | Example dataset in MAGEML-format |
| C282YL_FE_cy3 | Example dataset in MAGEML-format |
| C282Y_D_Cy3 | Example dataset in MAGEML-format |
| C282Y_L_cy3 | Example dataset in MAGEML-format |
| C282Y_L_Cy5 | Example dataset in MAGEML-format |
| C282Y_L_Fe_Cy5 | Example dataset in MAGEML-format |
| designElement | DesignElement class. |
| designElement-class | DesignElement class. |
| DesignElementHandler | Event handler for XML parser |
| Duocy3 | Example dataset in MAGEML-format |
| duo_Cy5 | Example dataset in MAGEML-format |
| E-MEXP-5.xml | Example dataset in MAGEML-format |
| EMEXP5 | Example dataset in MAGEML-format |
| getArrayDesign | Get arrayDesign object |
| getBioAssayData | Get bioAssayData object |
| getBioSequence | Get BioSequence information |
| getDesignElement | Get designElement object |
| getQuantitationTypes | Get quantitationType object |
| Iron | example dataset in MAGEML-format |
| LFeCy3 | Example dataset in MAGEML-format |
| LFe_cy5 | Example dataset in MAGEML-format |
| L_Cy5 | Example dataset in MAGEML-format |
| magePackageDetector | Find MAGE-ML packages in xml files |
| PackageDetectorHandler | Event Handler for XML parser |
| quantitationType | QuantitationType class. |
| quantitationType-class | QuantitationType class. |
| QuantitationTypeHandler | Event handler for XML parser |
| readMageDesign | Wrapper function for reading MAGE-ML documents |
| readMageRaw | Creation of marrayRaw object |
| show,ANY-method | ArrayDesign class. |
| show,arrayDesign-method | ArrayDesign class. |
| show,bioAssayData-method | BioAssayData class. |
| show,bioSample-method | BioSample class. |
| show,bioSequence-method | BioSequence class. |
| show,designElement-method | DesignElement class. |
| show,quantitationType-method | QuantitationType class. |
| showQuantitationTypes | Show quantitation types |
| TargetHandler | Event handler for XML parser |
| widget.readMageDesign | Wrapper function for reading MAGE-ML documents |
| widget.readMageRaw | Creation of marrayRaw object |
| _L_Cy3 | Example dataset in MAGEML-format |