| abstText |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| abstText,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| abstUrl |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| abstUrl,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| accessionToUID |
A function to convert accession values to NCBI UIDs. |
| articleTitle |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| articleTitle,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| authors |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| authors,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| checkArgs |
A function to locate neighboring genes within a defined range around a target gene represented by a LocusLink id |
| CHRLOC2chromLoc |
A function to generate an instantiation of a chromLocation class |
| chromInfo |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromInfo,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLengths |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLengths,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLocation-class |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLocs |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromLocs,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromNames |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| chromNames,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| contents |
Functions to deal with Data Packages |
| contents,environment-method |
Functions to deal with Data Packages |
| genbank |
A function to open the browser to Genbank with the selected gene. |
| genelocator |
A function to identify genes by their LocusLink (or other id). |
| geneSymbols |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| geneSymbols,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| getBoundary |
A function to locate neighboring genes within a defined range around a target gene represented by a LocusLink id |
| getGO |
Functions to deal with Data Packages |
| getGOdesc |
Functions to deal with Data Packages |
| getLL |
Functions to deal with Data Packages |
| getPMID |
Functions to deal with Data Packages |
| getPMInfo |
extract publication details and abstract from annotate::pubmed function output |
| getQuery4LL |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getQuery4UG |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getQueryLink |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getSYMBOL |
Functions to deal with Data Packages |
| getTDRows |
Functions to create hypertext links that can be placed in a table cell of a HTML file |
| getValidChr |
A function to locate neighboring genes within a defined range around a target gene represented by a LocusLink id |
| hgByChroms |
A dataset to show the human genome base pair locations per chromosome. |
| hgCLengths |
A dataset which contains the lengths (in base pairs) of the human chromosomes. |
| hgu95Achroloc |
Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95Achrom |
Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95AchromNames |
Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95All |
Annotation data for the Affymetrix HGU95A GeneChip |
| hgu95AProbLocs |
chromLocation instance hgu95AProbLocs, an example of a chromLocation object |
| hgu95Asym |
Annotation data for the Affymetrix HGU95A GeneChip |
| HTMLPage |
Classes to represent HTML pages |
| HTMLPage,HTMLPage-method |
Classes to represent HTML pages |
| HTMLPage-class |
Classes to represent HTML pages |
| pageText |
Classes to represent HTML pages |
| pageText,HTMLPage-method |
Classes to represent HTML pages |
| pageTitle |
Classes to represent HTML pages |
| pageTitle,HTMLPage-method |
Classes to represent HTML pages |
| pm.abstGrep |
An interface to grep for PubMed abstracts. |
| pm.getabst |
Obtain the abstracts for a set PubMed list. |
| pm.titles |
Obtain the titles of the PubMed abstracts. |
| pmAbst2HTML |
HTML Generation for PubMed Abstracts |
| pmAbst2html2 |
HTML Generation for PubMed Abstracts |
| pmid |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pmid,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pmidQuery |
A function to query PubMed |
| probesToChrom |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| probesToChrom,chromLocation-method |
Class chromLocation, a class for describing genes and their chromosome mappings. |
| pubDate |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pubDate,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pubmed |
A function to open the browser to Pubmed with the selected gene. |
| pubMedAbst |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pubMedAbst,pubMedAbst-method |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |
| pubMedAbst-class |
Class pubMedAbst, a class to handle PubMed abstracts, and methods for processing them. |