| marraySpots-class {marrayClasses} | R Documentation |
This class stores information on the spotted probe sequences for a batch of arrays.
A batch of arrays consists of a collection of arrays with the same layout ("marrayLayout"). The class contains slots for the layout of the arrays, and a description of the probe sequences spotted onto the arrays.
Objects can be created by calls of the form
new('marraySpots',
maGnames = ...., # Object of class marrayInfo
maLayout = ...., # Object of class marrayLayout
maGnames:"marrayInfo", description of spotted probe sequences.maLayout:"marrayLayout", layout parameters for the cDNA microarrays.signature(x = "marraySpots"): subsetting operator for spots on the array, ensures that all slots are subset properly.signature(from = "marrayRaw", to = "marraySpots"): coerce an object of class "marrayRaw" into an object of class "marraySpots". signature(from = "marrayNorm", to = "marraySpots"): coerce an object of class "marrayNorm" into an object of class "marraySpots". signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "marrayInfo"): slot assignment method.signature(object = "marraySpots"): method which computes a vector of grid column coordinates for each spot.signature(object = "marraySpots"): method which computes a vector of grid row coordinates for each spot.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "marrayLayout"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "numeric"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "numeric"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "numeric"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "numeric"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots", value = "numeric"): slot assignment method.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots"): slot assignment method. signature(object = "marraySpots"): method which computes a vector of print-tip-group indices for each spot.signature(object = "marraySpots"): method which computes a vector of spot column coordinates for each spot.signature(object = "marraySpots"): method which computes a vector of spot row coordinates for each spot.signature(object = "marraySpots"): slot accessor method.signature(object = "marraySpots"): slot assignment method.signature(x = "marraySpots"): print method for "marraySpots" class.Sandrine Dudoit, http://www.stat.berkeley.edu/~sandrine.
S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, Springer, New York.
marrayLayout, marrayRaw, marrayNorm, marrayInfo, marrayTwo, print-methods, [-methods.
## See marrayRaw