| integrinMediatedCellAdhesion {graph} | R Documentation |
A graph representing the integrin-mediated cell adhesion pathway from
KEGG, as well as a data.frame of attributes for use in plotting the
graph with Rgraphviz and a list to compare the nodes with their
respective LocusLink IDs.
data(integrinMediatedCellAdhesion)
The integrinMediatedCellAdhesion data set contains three objects:
The first is IMCAGraph, which is an object of class
graph-NEL and represents the hsa04510 graph from KEGG.
The second is IMCAAttrs, which is a data.frame with two columns,
and a row for every node in IMCAGraph. The first column lists
what color the node is represented with on the KEGG site. The
second column lists the type of the node - either genesym or
text. Most nodes are of type genesym as they represent
genes, but some of the nodes in the KEGG graph were not genes
and thus those nodes are of type text.
The third, IMCALocusLink is a named list where the names
correspond to the node names in IMCAGraph. The values of the
list are the LocusLink IDs that correspond to that node in the KEGG graph.
http://www.genome.ad.jp/kegg/pathway/hsa/hsa04510.html
data(integrinMediatedCellAdhesion)
if (require("Rgraphviz") & interactive())
plot(IMCAGraph)