| EBLOSUM30 |
Amino Acid Substitution matrices |
| EBLOSUM35 |
Amino Acid Substitution matrices |
| EBLOSUM40 |
Amino Acid Substitution matrices |
| EBLOSUM45 |
Amino Acid Substitution matrices |
| EBLOSUM50 |
Amino Acid Substitution matrices |
| EBLOSUM55 |
Amino Acid Substitution matrices |
| EBLOSUM60 |
Amino Acid Substitution matrices |
| EBLOSUM62 |
Amino Acid Substitution matrices |
| EBLOSUM65 |
Amino Acid Substitution matrices |
| EBLOSUM70 |
Amino Acid Substitution matrices |
| EBLOSUM75 |
Amino Acid Substitution matrices |
| EBLOSUM80 |
Amino Acid Substitution matrices |
| EBLOSUM85 |
Amino Acid Substitution matrices |
| EBLOSUM90 |
Amino Acid Substitution matrices |
| EPAM10 |
Amino Acid Substitution matrices |
| EPAM100 |
Amino Acid Substitution matrices |
| EPAM110 |
Amino Acid Substitution matrices |
| EPAM120 |
Amino Acid Substitution matrices |
| EPAM130 |
Amino Acid Substitution matrices |
| EPAM140 |
Amino Acid Substitution matrices |
| EPAM150 |
Amino Acid Substitution matrices |
| EPAM160 |
Amino Acid Substitution matrices |
| EPAM170 |
Amino Acid Substitution matrices |
| EPAM180 |
Amino Acid Substitution matrices |
| EPAM190 |
Amino Acid Substitution matrices |
| EPAM20 |
Amino Acid Substitution matrices |
| EPAM200 |
Amino Acid Substitution matrices |
| EPAM210 |
Amino Acid Substitution matrices |
| EPAM220 |
Amino Acid Substitution matrices |
| EPAM230 |
Amino Acid Substitution matrices |
| EPAM240 |
Amino Acid Substitution matrices |
| EPAM250 |
Amino Acid Substitution matrices |
| EPAM260 |
Amino Acid Substitution matrices |
| EPAM270 |
Amino Acid Substitution matrices |
| EPAM280 |
Amino Acid Substitution matrices |
| EPAM290 |
Amino Acid Substitution matrices |
| EPAM30 |
Amino Acid Substitution matrices |
| EPAM300 |
Amino Acid Substitution matrices |
| EPAM310 |
Amino Acid Substitution matrices |
| EPAM320 |
Amino Acid Substitution matrices |
| EPAM330 |
Amino Acid Substitution matrices |
| EPAM340 |
Amino Acid Substitution matrices |
| EPAM350 |
Amino Acid Substitution matrices |
| EPAM360 |
Amino Acid Substitution matrices |
| EPAM370 |
Amino Acid Substitution matrices |
| EPAM380 |
Amino Acid Substitution matrices |
| EPAM390 |
Amino Acid Substitution matrices |
| EPAM40 |
Amino Acid Substitution matrices |
| EPAM400 |
Amino Acid Substitution matrices |
| EPAM410 |
Amino Acid Substitution matrices |
| EPAM420 |
Amino Acid Substitution matrices |
| EPAM430 |
Amino Acid Substitution matrices |
| EPAM440 |
Amino Acid Substitution matrices |
| EPAM450 |
Amino Acid Substitution matrices |
| EPAM460 |
Amino Acid Substitution matrices |
| EPAM470 |
Amino Acid Substitution matrices |
| EPAM480 |
Amino Acid Substitution matrices |
| EPAM490 |
Amino Acid Substitution matrices |
| EPAM50 |
Amino Acid Substitution matrices |
| EPAM500 |
Amino Acid Substitution matrices |
| EPAM60 |
Amino Acid Substitution matrices |
| EPAM70 |
Amino Acid Substitution matrices |
| EPAM80 |
Amino Acid Substitution matrices |
| EPAM90 |
Amino Acid Substitution matrices |
| salign |
Optimal pairwise alignment of two protein sequences. |
| salign,AASequence,AASequence-method |
Optimal pairwise alignment of two protein sequences. |
| salign,AASequence,AASequenceList-method |
Optimal pairwise alignment of two protein sequences. |
| salign,AASequenceList,AASequence-method |
Optimal pairwise alignment of two protein sequences. |
| salign,AASequenceList,NULL-method |
Optimal pairwise alignment of two protein sequences. |
| salign-methods |
Optimal pairwise alignment of two protein sequences. |
| selfalign |
"AASequence" Object representation of a protein Sequence |
| selfalign,AASequence,Submatrix-method |
"AASequence" Object representation of a protein Sequence |
| seqgrep |
reader for databases in Fasta file format. |
| sequlist |
AASequenceList with 66 entries. |
| show,AAAlignment-method |
"AAAlignment" result of pairwise sequence alignment. |
| show,AAAlphabet-method |
Class "AAAlphabet" Amino Acid Alphabet |
| show,AASequence-method |
"AASequence" Object representation of a protein Sequence |
| show,Submatrix-method |
Class "Submatrix" Substitution Matrix |
| subFromEmboss |
Class "Submatrix" Substitution Matrix |
| subFromEmboss,Submatrix,character-method |
Class "Submatrix" Substitution Matrix |
| Submatrix |
Class "Submatrix" Substitution Matrix |
| Submatrix-class |
Class "Submatrix" Substitution Matrix |
| summary,AAAlignment-method |
"AAAlignment" result of pairwise sequence alignment. |