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A B C D F G J M P Q R S T W misc
| actin3 | Accessor Methods for QCStats class |
| actin3,QCStats-method | Class "QCStats" |
| actin3-methods | Class "QCStats" |
| actin35 | Accessor Methods for QCStats class |
| actin35,QCStats-method | Class "QCStats" |
| actin35-methods | Class "QCStats" |
| actin3M | Accessor Methods for QCStats class |
| actin3M,QCStats-method | Class "QCStats" |
| actin3M-methods | Class "QCStats" |
| actin5 | Accessor Methods for QCStats class |
| actin5,QCStats-method | Class "QCStats" |
| actin5-methods | Class "QCStats" |
| actinM | Accessor Methods for QCStats class |
| actinM,QCStats-method | Class "QCStats" |
| actinM-methods | Class "QCStats" |
| avbg | Accessor Methods for QCStats class |
| avbg,QCStats-method | Class "QCStats" |
| avbg-methods | Class "QCStats" |
| bg.correct.sa | Simpleaffy Implementation of Mas5 Background Correction |
| bioB | Accessor Methods for QCStats class |
| bioB,QCStats-method | Class "QCStats" |
| bioB-methods | Class "QCStats" |
| bioC | Accessor Methods for QCStats class |
| bioC,QCStats-method | Class "QCStats" |
| bioC-methods | Class "QCStats" |
| bioD | Accessor Methods for QCStats class |
| bioD,QCStats-method | Class "QCStats" |
| bioD-methods | Class "QCStats" |
| call.exprs | Generate Expression Summaries for Affymetrix Data |
| calls | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| calls,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| creX | Accessor Methods for QCStats class |
| creX,QCStats-method | Class "QCStats" |
| creX-methods | Class "QCStats" |
| detection.p.val | Calculate Detection P Values |
| fc | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| fc,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| gapdh3 | Accessor Methods for QCStats class |
| gapdh3,QCStats-method | Class "QCStats" |
| gapdh3-methods | Class "QCStats" |
| gapdh35 | Accessor Methods for QCStats class |
| gapdh35,QCStats-method | Class "QCStats" |
| gapdh35-methods | Class "QCStats" |
| gapdh3M | Accessor Methods for QCStats class |
| gapdh3M,QCStats-method | Class "QCStats" |
| gapdh3M-methods | Class "QCStats" |
| gapdh5 | Accessor Methods for QCStats class |
| gapdh5,QCStats-method | Class "QCStats" |
| gapdh5-methods | Class "QCStats" |
| gapdhM | Accessor Methods for QCStats class |
| gapdhM,QCStats-method | Class "QCStats" |
| gapdhM-methods | Class "QCStats" |
| get.annotation | Get annotation data for a gene list |
| get.array.subset | Get a subset of arrays from an affybatch object, split by phnotypic data |
| get.array.subset,AffyBatch-method | Get a subset of arrays from an affybatch object, split by phnotypic data |
| get.array.subset,exprSet-method | Get a subset of arrays from an affybatch object, split by phnotypic data |
| get.array.subset.affybatch | Get a subset of arrays from an affybatch object, split by phnotypic data |
| get.array.subset.exprset | Get a subset of arrays from an affybatch object, split by phnotypic data |
| get.fold.change.and.t.test | Compute fold change and t-test statistics between two experimental groups |
| getActin3 | Gets the probesetid for the specified control probe |
| getActin5 | Gets the probesetid for the specified control probe |
| getActinM | Gets the probesetid for the specified control probe |
| getAlpha1 | Gets the probesetid for the specified control probe |
| getAlpha2 | Gets the probesetid for the specified control probe |
| getBioB | Gets the probesetid for the specified control probe |
| getBioC | Gets the probesetid for the specified control probe |
| getBioD | Gets the probesetid for the specified control probe |
| getCreX | Gets the probesetid for the specified control probe |
| getGapdh3 | Gets the probesetid for the specified control probe |
| getGapdh5 | Gets the probesetid for the specified control probe |
| getGapdhM | Gets the probesetid for the specified control probe |
| getQCParams | Get Array Dependent QC Parameters |
| getQCParams,AffyBatch-method | Get Array Dependent QC Parameters |
| getQCParams-methods | Get Array Dependent QC Parameters |
| getTao | Gets the probesetid for the specified control probe |
| group | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| group,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| journalpng | Produce a device for producing artwork for presentations and journals |
| justMAS | Generate Expression calls using a C implementation of the MAS 5.0 Algorithm |
| maxbg | Accessor Methods for QCStats class |
| maxbg,QCStats-method | Class "QCStats" |
| maxbg-methods | Class "QCStats" |
| means | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| means,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| members | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| members,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| minbg | Accessor Methods for QCStats class |
| minbg,QCStats-method | Class "QCStats" |
| minbg-methods | Class "QCStats" |
| PairComp-class | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| pairwise.comparison | Compute pairwise comparison statistics between two experimental groups |
| pairwise.filter | Filter pairwise comparison statistics between two experimental groups |
| pairwise.filter,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| percent.present | Accessor Methods for QCStats class |
| percent.present,QCStats-method | Class "QCStats" |
| percent.present-methods | Class "QCStats" |
| plot,QCStats | Plots a QCStats object |
| plot,QCStats-method | Plots a QCStats object |
| plot.qc.stats | Plots a QCStats object |
| qc | Generate QC stats from an AffyBatch object |
| qc,AffyBatch-method | Generate QC stats from an AffyBatch object |
| qc.affy | Generate Affymetrix Style QC Statistics |
| QCStats-class | Class "QCStats" |
| read.affy | Read a Set of .CEL Files and Phenotypic Data |
| results.summary | Get annotation data for a gene list |
| screenpng | Produce a device for producing artwork for presentations and journals |
| sfs | Accessor Methods for QCStats class |
| sfs,QCStats-method | Class "QCStats" |
| sfs-methods | Class "QCStats" |
| target | Accessor Methods for QCStats class |
| target,QCStats-method | Class "QCStats" |
| target-methods | Class "QCStats" |
| trad.scatter.plot | Does a Traditional Scatter Plot of Expression Data |
| tt | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| tt,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| write.annotation | Get annotation data for a gene list |
| [,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
| [<-,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |