| QCStats-class {simpleaffy} | R Documentation |
Holds Quality Control data for a set of Affymetrix arrays
Objects can be created by calls of the form qc(AffyBatch).
scale.factors:"numeric" Scale factors used to scale the chips to the specified target intensity target:"numeric" The target intensity to which the chips were scaled percent.present:"numeric" Number of genes called present average.background:"numeric" The average background for the arrays minimum.background:"numeric" The minimum background for the arrays maximum.background:"numeric" The maximum background for the arrays bioB:"character" bioB present call bioC:"character" bioC present call bioD:"character" bioD present call creX:"character" creX present call gapdh3:"numeric" gapdh 3' intensity gapdhM:"numeric" gapdh M intensity gapdh5:"numeric" gapdh 5' intensity actin3:"numeric" beta actin 3' intensity actinM:"numeric" beta actin M intensity actin5:"numeric" beta actin 5' intensity signature(object = "QCStats"): beta actin 3' 5' ratio signature(object = "QCStats"): beta actin 3' intensity signature(object = "QCStats"): beta actin 3' M ratio signature(object = "QCStats"): beta actin 5' intensity signature(object = "QCStats"): beta actin M intensity signature(object = "QCStats"): average backgroundsignature(object = "QCStats"): bioB call signature(object = "QCStats"): bioC call signature(object = "QCStats"): bioD call signature(object = "QCStats"): creX call signature(object = "QCStats"): gapdh 3' 5' ratio signature(object = "QCStats"): gapdh 3' intensity signature(object = "QCStats"): gapdh 3' M ratio signature(object = "QCStats"): gapdh 5' inensity signature(object = "QCStats"): gapdh M intensity signature(object = "QCStats"): maximum background signature(object = "QCStats"): minimum background signature(object = "QCStats"): no probesets called present signature(x = "QCStats"): Plot a QCStats object signature(object = "QCStats"): scale factors signature(object = "QCStats"): target scaling Crispin J Miller