Estimate protein complex membership using AP-MS protein data

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Documentation for package `apComplex' version 1.0.1

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bhmaxSubgraph Find maximal BH-complete subgraph
findComplexes Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology
HMSPCI High-Throughput Mass Spectromic Protein Complex Identification (HMSPCI) Data from Ho, et al. (2002)
HMSPCIgraph High-Throughput Mass Spectromic Protein Complex Identification (HMSPCI) Data from Ho, et al. (2002)
LCdelta Computes change in LxC measure
MBMEcHMSPCI HMSPCI data complex estimates
MBMEcTAP TAP data complex estimates
mergeComplexes Iteratively combine columns in initial PCMG estimate
reduceMat Remove matrix columns
reduceMatNew Remove matrix columns
SBMHcHMSPCI HMSPCI data complex estimates
SBMHcTAP TAP data complex estimates
TAP Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
TAPgraph Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
UnRBBcHMSPCI HMSPCI data complex estimates
UnRBBcTAP TAP data complex estimates
vecInMat Vector in Matrix
whichVecInMat Which Vector in Matrix
yTAP yTAP Complexes published Gavin, et al. (2002).