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| a.arise | A Arise |
| alter.unique | Remove Duplicates |
| bg.correct | Background Correction |
| classes | Classes Defined by this Package |
| cys.plot | Data Visualization: Cy3 vs Cy5 |
| DataSet-class | DataSet - class |
| filter.spot | Intensity-based filtering of array elements |
| genArise | GUI: Graphical User Interface |
| genMerge | genMerge: Post-Genomic Analysis |
| global.norm | Global Normalization of Spot |
| grid.norm | Normalization by grid of Spot |
| i.arise | I Arise |
| imageLimma | Image Plot of Microarray |
| m.arise | M Arise |
| ma.plot | Data Visualization: M vs. A plot |
| meanUnique | Remove Duplicates |
| r.arise | Get R value |
| read.spot | Read Spot from File |
| ri.plot | Data Visualization: R vs I |
| Simon | Dataset: Little fragment of a microarray from IFC UNAM |
| Spot-class | Spot - class |
| spotUnique | Replicate filtering |
| write.dataSet | Write dataSet |
| write.spot | Write Spot |
| WT.dataset | Microarray from the IFC |
| Zscore | Z-scores for identifying differential expression |
| Zscore.plot | Z-score Data Visualization: R vs I or M vs A |