| clusterData-class {goCluster} | R Documentation |
This class provides a container for microarray data.
This class provides a wrapper for exprSet objects from bioconductor. Its
main function is to provide a link to the annotation. Therefore a vector of
unique ids that connects each element (row) in the dataset with its
corresponding annotation terms has to be provided.
name:"character", a
name for the dataset.dataset:"exprSet", the dataset
for the analysis.uniqueid:"character", the
unique id for each gene (row) in the dataset.anno:"clusterAnnotation", the
annotation object that holds the annotation to this dataset.
Additional slots are described in the documentation of the
clusterModule-class.
Class "clusterModule", directly.
signature(object = "clusterModule"): interactive
setup of the class. signature(object = "clusterModule"): returns the
configuration (including the dataset) of the object as a
list. This list can be used for the non-interactive setup of the
class.signature(object = "clusterModule"):
non-interactive setup of the class. The options are specified
using a list. signature(object = "clusterModule"): passes the
execute-call to the annotation object. signature(object = "clusterModule"): passes the
execute<--call to the annotation object. signature(object = "clusterModule"): This only
conveys the reset signal to the clusterAnnotation
object. The dataset of the clusterData object will not be removed
by this reset method. A new goCluster-object should be created for
each new dataset. Gunnar Wrobel, http://www.gunnarwrobel.de.
goCluster-class,
clusterAnnotation-class,
setup,
setup<-,
execute,
reset
.