| clusterStatisticHyper-class {goCluster} | R Documentation |
This class provides the hypergeometric distribution for goCluster and can be used to identify gene groups that show a significant enrichement of similar annotation terms.
The class provides a wrapper around the evalClusterHyper
function. Please read the corresponding documentation for further
details.
All slots are described in the documentation of the
clusterStatistic-class and clusterModule-class.
Class "clusterStatistic", directly.
Class "clusterModule", by class "clusterStatistic".
signature(object = "clusterStatisticHyper"):
interactive setup of the class. There are no options that you can
set on this class.signature(object = "clusterStatisticHyper"):
returns the configuration of the object as a list. Since there are
no options to this class, this is always an empty list. signature(object = "clusterStatisticHyper"):
non-interactive setup of the class. Not necessary since this class
has no options.signature(object = "clusterStatisticHyper"):
runs the statistical analysis on the clustering results provided
by the parent class. signature(object = "clusterStatisticHyper"):
resets the results of this class so that the analysis can be run
again. Gunnar Wrobel, http://www.gunnarwrobel.de.
evalClusterHyper,
goCluster-class,
clusterModule-class,
clusterStatistic-class