| stamNet-class {stam} | R Documentation |
Objects of this class describe a network of classifiers as it is used by structured analysis of microarray data.
Objects can be created by calls of the form new("stamNet", chip, root, probes),
or by a call to stam.net.
chiprootprobeschip:"character", the name of the chip for
which the classifier net is generated.root:"character", the GO identifier of the
node where the generation of the classifier net is started.chippkg:"character", information on the
version of the meta data package for the chipGOpkg:"character", information on the version
of the meata data package on the Gene Ontologynodes:"list", elements are of class
stamINode or stamLeaf, one for each node in the classifier net.leafs:"numeric", indices of all leaf nodes in
slot nodesinodes:"numeric", indices of all inner nodes in
slot nodesprobes:"environment", the corresponding index
for each probeset in the expression matrices to be analyzedsignature(x = "stamNet"): print information on the classifier
netsignature(x = "stamNet"): generate HTML information on the
classifier net. However, using stam.writeHTML is recommended.Claudio Lottaz
stam.net, stamLeaf-class,
stamINode-class