| clusterVisualNone-class {goCluster} | R Documentation |
The class can be used to avoid specifying a
visualization method when performing an analysis with goCluster.
All slots are described in the documentation for the
clusterModule-class.
Class "clusterVisual", directly.
Class "clusterModule", by class "clusterVisual".
signature(object = "clusterVisualNone"): The
class has no parameters. This method does not result in any
action.signature(object = "clusterVisualNone"): The
class has no executable function defined and will do nothing. signature(object = "clusterVisualNone"): The
class has no parameters. This method returns an empty list. signature(object = "clusterVisualNone"): The
class has no parameters. This method does not result in any
action. signature(object = "clusterVisualNone"):
resets the results of this class so that the analysis can be run
again. signature(object = "clusterVisualNone"):
generates the actual graphic for this object. signature(x = "clusterVisualNone"): prints
generic information about the object. Gunnar Wrobel, http://www.gunnarwrobel.de.
goCluster-class,
clusterModule-class,
clusterVisual-class
set.seed(1000)
data(benomylsetupsmall)
a <- new("goCluster")
## This will result in an object without visualization
execute(a) <- benomylsetupsmall
## We can choose and add the visualization method afterwards
## Create the visualization method
b <- new("clusterVisualHeatmap")
## Assign the new method to the old goCluster object
a@visu <- b
## Prepare the visualization
a@visu <- execute(a@visu, a)
if(interactive()){
## This example can only be run in an interactive mode
## This plot shows only four genes since the loaded dataset
## has been reduced to only 100 genes. Try the same with
## the full dataset
display(a, selection = "GO:0003735")
}