| AASequence-class {pairseqsim} | R Documentation |
Object representation of a protein Sequence
Objects can be created by calls of the form new("AASequence", sequence, info, alphabet).
or by call to AASequence("PROTINSEQUENCEHERE",info="my prot seq")
.Data:"character" the sequenceinfo:"character" the info
Class "character", directly.
signature(x = "AASequence"): returns the
amino acid frequencies signature(.Object = "AASequence"): internal signature(object = "AASequence"): read FASTA
file formatsignature(obj1 = "AASequenceList", obj2 = "AASequence"): see: salign-methodssignature(obj1 = "AASequence", obj2 = "AASequenceList"): see: salign-methodssignature(obj1 = "AASequence", obj2 = "AASequence"): see: salign-methodssignature(object = "AASequence", sub =
"Submatrix"): Computes Smith-Waterman score of the alignment of
the sequence with itself.signature(object = "AASequence"): signature(obj1 = "AASequence", obj2 =
"AASequence"): internal, see: testalign-methodsWitold E. Wolski witek96@users.sourceforge.net
http://r4proteomics.sourceforge.net
salign-methods,readFasta-methods
seq1<-new("AASequence","MEDQVGFGFRPNDEEL",info="seq1")
seq2<-AASequence("seq2","VAISEVNICSY")