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| CNSeg | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| CNSeg-class | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| diffBy | A filter that filters out features that do not differ by a set threshold between a pair of samples |
| diffBy,ANY-method | A filter that filters out features that do not differ by a set threshold between a pair of samples |
| diffBy,RS-method | A filter that filters out features that do not differ by a set threshold between a pair of samples |
| diffBy-method | A filter that filters out features that do not differ by a set threshold between a pair of samples |
| genefilter,RS-method | ~~ Methods for Function genefilter ~~ |
| genefilter-methods | ~~ Methods for Function genefilter ~~ |
| geneInfo | method that convert segment data into reduced segment matrix |
| getCor | Method that extends the cor function of stats to handle reduced segment data |
| getCor,ANY-method | Method that extends the cor function of stats to handle reduced segment data |
| getCor,RS-method | Method that extends the cor function of stats to handle reduced segment data |
| getCor-method | Method that extends the cor function of stats to handle reduced segment data |
| getDist | A method that extends the generic function dist to handle reduced segemnts |
| getDist,ANY-method | A method that extends the generic function dist to handle reduced segemnts |
| getDist,RS-method | A method that extends the generic function dist to handle reduced segemnts |
| getDist-method | A method that extends the generic function dist to handle reduced segemnts |
| getRS | method that convert segment data into reduced segment matrix |
| getRS,CNSeg-method | method that convert segment data into reduced segment matrix |
| getRS-method | method that convert segment data into reduced segment matrix |
| madFilter | Method that filters reduced segment matrix by the mean absolute deviation |
| madFilter,ANY-method | Method that filters reduced segment matrix by the mean absolute deviation |
| madFilter,RS-method | Method that filters reduced segment matrix by the mean absolute deviation |
| madFilter-method | Method that filters reduced segment matrix by the mean absolute deviation |
| rs | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| rs,RS-method | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| RS-class | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| rs<- | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| rs<-,RS-method | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| sampleData | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| segBy | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| segBy,RS-method | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |
| segList | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| segList,CNSeg-method | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| segList-method | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| segList<- | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| segList<-,CNSeg-method | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| show,CNSeg-method | Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods |
| show,RS-method | Class "RS" contains the Reduced Segment data matrix derived from the output of segmentation |