![[R logo]](../../../doc/html/logo.jpg)
| ALLs.chr22 | Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1 |
| annotation,ChrStrandData-method | Class to contain data associated with chromosome coordinates across a whole genome. |
| chrdata | The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData object |
| chrHeatMap | Plot ChrStrandMatrix objects as heat maps along a chromosome |
| ChrMapPlot | Class containing a mapping between plot location and probe identifier. |
| ChrMapPlot-class | Class containing a mapping between plot location and probe identifier. |
| chrNames | Retrieve chromosome names from an object. |
| chrNames,ChrStrandData-method | Class to contain data associated with chromosome coordinates across a whole genome. |
| chrNames,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |
| ChrStrandData | Class to contain data associated with chromosome coordinates across a whole genome. |
| ChrStrandData-class | Class to contain data associated with chromosome coordinates across a whole genome. |
| ChrStrandMatrix | Class to contain data associated with genome locations for a specific chromosome. |
| ChrStrandMatrix-class | Class to contain data associated with genome locations for a specific chromosome. |
| class:ChrMapPlot | Class containing a mapping between plot location and probe identifier. |
| class:ChrStrandData | Class to contain data associated with chromosome coordinates across a whole genome. |
| class:ChrStrandMatrix | Class to contain data associated with genome locations for a specific chromosome. |
| createChrMatrix | Generate chromosome-based subset matrices from the mapped data structures generated by makeChrStrandData |
| cytobands | Cytoband location information |
| drawMapDendro | Draw a heatmap and dendrogram for a strand-specific data matrix generated by createChrMatrix |
| exprs,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |
| featureNames,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |
| grabChrMapProbes | Identify the probes plotted using plotChrMap |
| makeChrStrandData | Map a data matrix onto chromosome coordinates |
| makeChrStrandData,ExpressionSet-method | Map a data matrix onto chromosome coordinates |
| makeChrStrandData,matrix-method | Map a data matrix onto chromosome coordinates |
| makeChrStrandData-methods | Map a data matrix onto chromosome coordinates |
| makeRangedDataList | Plot expression data as tracks in the UCSC genome browser |
| plotChrMap | Plot data as an annotated heat map along a chromosome |
| sampleNames,ChrStrandData-method | Class to contain data associated with chromosome coordinates across a whole genome. |
| sampleNames,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |
| show,ChrMapPlot-method | Class containing a mapping between plot location and probe identifier. |
| show,ChrStrandData-method | Class to contain data associated with chromosome coordinates across a whole genome. |
| show,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |
| stains | Cytoband display information |
| strandName | Retrieve strand information from a ChrStrandMatrix object. |
| strandName,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |
| summary,ChrMapPlot-method | Class containing a mapping between plot location and probe identifier. |
| summary,ChrStrandData-method | Class to contain data associated with chromosome coordinates across a whole genome. |
| summary,ChrStrandMatrix-method | Class to contain data associated with genome locations for a specific chromosome. |