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| HTqPCR-package | Analysis of High-Throughput qPCR data (HTqPCR) |
| clusterCt | Clustering of qPCR Ct values |
| exprs,qPCRset-method | Class "qPCRset" |
| exprs<-,qPCRset,matrix-method | Class "qPCRset" |
| featureCategory | Class "qPCRset" |
| featureCategory<- | Class "qPCRset" |
| featureClass | Class "qPCRset" |
| featureClass<- | Class "qPCRset" |
| featureNames,qPCRset-method | Class "qPCRset" |
| featureNames<-,qPCRset,character-method | Class "qPCRset" |
| featurePos | Class "qPCRset" |
| featurePos<- | Class "qPCRset" |
| featureType | Class "qPCRset" |
| featureType<- | Class "qPCRset" |
| filterCategory | Filter Ct values based on their feature categories. |
| filterCtData | Filter out features (genes) from qPCR data. |
| flag | Class "qPCRset" |
| flag<- | Class "qPCRset" |
| heatmapSig | Heatmap of deltadeltaCt values from qPCR data. |
| HTqPCR | Analysis of High-Throughput qPCR data (HTqPCR) |
| limmaCtData | Differentially expressed features with qPCR: limma |
| n.samples | Class "qPCRset" |
| n.wells | Class "qPCRset" |
| normalizeCtData | Normalization of Ct values from qPCR data. |
| normalized | Class "qPCRset" |
| plotCtBoxes | Boxplots for qPCR Ct values. |
| plotCtCard | Image plot of qPCR Ct values from a card format |
| plotCtCategory | Summarising the feature categories for Ct values. |
| plotCtCor | Correlation between Ct values from qPCR data |
| plotCtDensity | Distribution plot for qPCR Ct values. |
| plotCtHeatmap | Heatmap of qPCR Ct values. |
| plotCtHistogram | Histrogram of Ct values from qPCR experiments. |
| plotCtLines | Plotting Ct values from qPCR across multiple samples. |
| plotCtOverview | Overview plot of qPCR Ct values across multiple conditions. |
| plotCtPairs | Pairwise scatterplot of multiple sets of Ct values from qPCR data. |
| plotCtPCA | PCA for qPCR Ct values. |
| plotCtReps | Scatter plot of features analysed twice during each qPCR experiment. |
| plotCtRQ | Plot the relative quantification of Ct values from qPCR experiments. |
| plotCtScatter | Scatterplot of two sets of Ct values from qPCR data. |
| plotCtSignificance | Barplot with Ct values between genes from qPCR. |
| plotCVBoxes | Boxplots of CV for qPCR Ct values. |
| qPCRpros | Example processed qPCR data |
| qPCRraw | Example raw qPCR data. |
| qPCRset-class | Class "qPCRset" |
| readCtData | Reading Ct values from qPCR experiments data into a qPCRset |
| sampleNames,qPCRset-method | Class "qPCRset" |
| sampleNames<-,qPCRset,character-method | Class "qPCRset" |
| setCategory | Assign categories to Ct values from qPCR data. |
| show,qPCRset-method | Class "qPCRset" |
| summary,qPCRset-method | Class "qPCRset" |
| ttestCtData | Differentially expressed features with qPCR: t-test |
| [,qPCRset-method | Class "qPCRset" |