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| KCsmart-package | KCsmart |
| calcSpm | KCsmart wrapper |
| calcSpmCollection | KCsmart Comparative wrapper |
| compareSpmCollection | KCsmart Comparative calculate null distribution |
| compKc-class | KC smart comparative |
| compKcSigRegions-class | KC smart comparative |
| findSigLevelFdr | This function has not been properly implemented yet |
| findSigLevelTrad | Find significance level |
| getSigRegionsCompKC | KCsmart Comparative calculate the signficant regions |
| getSigSegments | Retrieve the significantly gained and lost regions including the corresponding, original probes |
| hsMirrorLocs | Mirror locations of the human genome |
| hsSampleData | Homo Sapiens artificial cgh data set |
| idPoints | Identify points in sample point matrix plot |
| initialize,compKc-method | KC smart comparative |
| initialize,KcghData-method | Class "KcghData" |
| initialize,KcghDataMirror-method | Class "KcghDataMirror" |
| initialize,KcghDataSplit-method | Class "KcghDataSplit" |
| initialize,KcghDataSum-method | Class "KcghDataSum" |
| initialize,probeAnnotation-method | Class "probeAnnotation" |
| KCData-class | Internal class "KCData" |
| KcghData-class | Class "KcghData" |
| KcghDataMirror-class | Class "KcghDataMirror" |
| KcghDataSplit-class | Class "KcghDataSplit" |
| KcghDataSum-class | Class "KcghDataSum" |
| KCsmart | KCsmart |
| length,KCData-method | Internal class "KCData" |
| mmMirrorLocs | Mirror locations of the mouse genome |
| plot | Plot a sample point matrix |
| plot,compKc,missing-method | Plot a sample point matrix |
| plot,compKc-method | KC smart comparative |
| plot,samplePointMatrix,missing-method | Plot a sample point matrix |
| plot,scaleSpace,missing-method | Plot a sample point matrix |
| plotScaleSpace | Plot multiple significant regions in one figure |
| probeAnnotation-class | Class "probeAnnotation" |
| samplePointMatrix-class | Sample point matrix |
| show,compKc-method | KC smart comparative |
| show,compKcSigRegions-method | KC smart comparative |
| show,samplePointMatrix-method | Sample point matrix |
| show,sigSegments-method | Significant segments |
| show,spmCollection-method | Sample point matrix collection |
| sigSegments-class | Significant segments |
| sort,KcghData,missing-method | Class "KcghData" |
| sort,KcghDataSum,missing-method | Class "KcghDataSum" |
| spmCollection-class | Sample point matrix collection |
| unlist,KCData-method | Internal class "KCData" |
| write.table | Write summary of the significant regions to a table |
| write.table,compKcSigRegions-method | Write summary of the significant regions to a table |
| write.table,sigSegments-method | Write summary of the significant regions to a table |
| [,probeAnnotation-method | Class "probeAnnotation" |
| [[,KCData-method | Internal class "KCData" |
| [[<-,KCData-method | Internal class "KCData" |