| geneSubsets-class |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getClassifierName |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getClassifierName,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getClassifierName<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getClassifierName<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getDataset |
getDataset Method to access the attributes of a dataset from an assessment |
| getDataset,assessment-method |
getDataset Method to access the attributes of a dataset from an assessment |
| getDataset-methods |
getDataset Method to access the attributes of a dataset from an assessment |
| getDataset<- |
getDataset<- Method to modify the attributes of a dataset from an assessment |
| getDataset<-,assessment-method |
getDataset<- Method to modify the attributes of a dataset from an assessment |
| getDataset<--methods |
getDataset<- Method to modify the attributes of a dataset from an assessment |
| getFeatureSelectionMethod,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getFeatureSelectionOptions |
getFeatureSelectionOptions Method to access the attributes of a featureSelectionOptions from an assessment |
| getFeatureSelectionOptions,assessment-method |
getFeatureSelectionOptions Method to access the attributes of a featureSelectionOptions from an assessment |
| getFeatureSelectionOptions-methods |
getFeatureSelectionOptions Method to access the attributes of a featureSelectionOptions from an assessment |
| getFeatureSelectionOptions<- |
getFeatureSelectionOptions<- Method to modify the attributes of a featureSelectionOptions from an assessment |
| getFeatureSelectionOptions<-,assessment-method |
getFeatureSelectionOptions<- Method to modify the attributes of a featureSelectionOptions from an assessment |
| getFeatureSelectionOptions<--methods |
getFeatureSelectionOptions<- Method to modify the attributes of a featureSelectionOptions from an assessment |
| getFinalClassifier |
getFinalClassifier Method to access the attributes of a finalClassifier from an assessment |
| getFinalClassifier,assessment-method |
getFinalClassifier Method to access the attributes of a finalClassifier from an assessment |
| getFinalClassifier-methods |
getFinalClassifier Method to access the attributes of a finalClassifier from an assessment |
| getGenesFromBestToWorst |
finalClassifier: A class to store the final classifier corresponding to an assessment |
| getGenesFromBestToWorst,finalClassifier-method |
finalClassifier: A class to store the final classifier corresponding to an assessment |
| getMaxSubsetSize |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getMaxSubsetSize,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getMaxSubsetSize<- |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getMaxSubsetSize<-,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getModels |
finalClassifier: A class to store the final classifier corresponding to an assessment |
| getModels,finalClassifier-method |
finalClassifier: A class to store the final classifier corresponding to an assessment |
| getNoFolds1stLayer |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds1stLayer,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds1stLayer<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds1stLayer<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds2ndLayer |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds2ndLayer,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds2ndLayer<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoFolds2ndLayer<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoModels |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getNoModels,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getNoOfRepeats |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoOfRepeats,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoOfRepeats<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoOfRepeats<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getNoThresholds |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getNoThresholds,thresholds-method |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getNoThresholds<- |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getNoThresholds<-,thresholds-method |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getOptionValues |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getOptionValues,featureSelectionOptions-method |
"featureSelectionOptions": A virtual class to store the options of a feature selection |
| getOptionValues,thresholds-method |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getOptionValues<- |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getOptionValues<-,thresholds-method |
thresholds: A class to handle the thresholds to be tested during training of the Nearest
Shrunken Centroid |
| getResult1LayerCV |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult1LayerCV,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult1LayerCV<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult1LayerCV<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult2LayerCV |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult2LayerCV,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult2LayerCV<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResult2LayerCV<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getResults |
getResults Method to access the result of one-layer and two-layers cross-validation from an assessment |
| getResults,assessment-method |
getResults Method to access the result of one-layer and two-layers cross-validation from an assessment |
| getResults-methods |
getResults Method to access the result of one-layer and two-layers cross-validation from an assessment |
| getSpeed |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSpeed,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSpeed<- |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSpeed<-,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSubsetsSizes |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSubsetsSizes,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSubsetsSizes<- |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSubsetsSizes<-,geneSubsets-method |
geneSubsets: A class to handle the sizes of gene susbets to be tested during forward gene selection |
| getSvmKernel |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getSvmKernel,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getSvmKernel<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getSvmKernel<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getTypeFoldCreation |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getTypeFoldCreation,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getTypeFoldCreation<- |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| getTypeFoldCreation<-,assessment-method |
assessment: A central class to perform one and two layers of external cross-validation on microarray data |
| show,assessment-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,cvErrorRate-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,cvErrorRate2ndLayer-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,errorRate1stLayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,errorRate2ndLayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,finalClassifier-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,frequencyGenes-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,frequencyTopGenePerOneModel-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,geneSubsets-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,result2LayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,resultRepeated1LayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,resultRepeated2LayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,resultSingle1LayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,selectedGenes-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,selectedGenes1stLayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,selectedGenes2ndLayerCV-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,selectedGenesPerOneOption-method |
show Display the object, by printing, plotting or whatever suits its class |
| show,thresholds-method |
show Display the object, by printing, plotting or whatever suits its class |