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| qpgraph-package | The q-order partial correlation graph learning software, qpgraph. |
| EcoliOxygen | Preprocessed microarray oxygen deprivation data and filtered RegulonDB data |
| filtered.regulon6.1 | Preprocessed microarray oxygen deprivation data and filtered RegulonDB data |
| gds680.eset | Preprocessed microarray oxygen deprivation data and filtered RegulonDB data |
| qpAnyGraph | A graph |
| qpAvgNrr | Average non-rejection rate estimation |
| qpAvgNrr,data.frame-method | Average non-rejection rate estimation |
| qpAvgNrr,ExpressionSet-method | Average non-rejection rate estimation |
| qpAvgNrr,matrix-method | Average non-rejection rate estimation |
| qpCItest | Conditional independence test |
| qpCItest,data.frame-method | Conditional independence test |
| qpCItest,ExpressionSet-method | Conditional independence test |
| qpCItest,matrix-method | Conditional independence test |
| qpClique | Complexity of the resulting qp-graphs |
| qpCliqueNumber | Clique number |
| qpDscale | Scale a matrix by its diagonal |
| qpEdgeNrr | Non-rejection rate estimation for a pair of variables |
| qpEdgeNrr,data.frame-method | Non-rejection rate estimation for a pair of variables |
| qpEdgeNrr,ExpressionSet-method | Non-rejection rate estimation for a pair of variables |
| qpEdgeNrr,matrix-method | Non-rejection rate estimation for a pair of variables |
| qpFunctionalCoherence | Functional coherence estimation |
| qpGetCliques | Clique list |
| qpGraph | The qp-graph |
| qpgraph | The q-order partial correlation graph learning software, qpgraph. |
| qpGraphDensity | Densities of resulting qp-graphs |
| qpHist | Histograms of non-rejection rates |
| qpI2K | Random concentration matrix |
| qpImportNrr | Import non-rejection rates |
| qpIPF | Iterative proportional fitting algorithm |
| qpK2R | Partial correlation coefficients |
| qpNrr | Non-rejection rate estimation |
| qpNrr,data.frame-method | Non-rejection rate estimation |
| qpNrr,ExpressionSet-method | Non-rejection rate estimation |
| qpNrr,matrix-method | Non-rejection rate estimation |
| qpPAC | Estimation of partial correlation coefficients |
| qpPAC,data.frame-method | Estimation of partial correlation coefficients |
| qpPAC,ExpressionSet-method | Estimation of partial correlation coefficients |
| qpPAC,matrix-method | Estimation of partial correlation coefficients |
| qpPCC | Estimation of Pearson correlation coefficients |
| qpPCC,data.frame-method | Estimation of Pearson correlation coefficients |
| qpPCC,ExpressionSet-method | Estimation of Pearson correlation coefficients |
| qpPCC,matrix-method | Estimation of Pearson correlation coefficients |
| qpPrecisionRecall | Calculation of precision-recall curves |
| qpPRscoreThreshold | Calculation of scores thresholds attaining nominal precision or recall levels |
| qpRndGraph | Random undirected graphs with maximum connectivity degree |
| qpSampleMvnorm | Sample multivariate normal observations |