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| exportFASTA | Exports getSequence results to FASTA format |
| getAffyArrays | Displays affy identifiers of Affymetrix chips supported by the Ensembl package |
| getBM | Retrieves information from the BioMart database |
| getFeature | Retrieves Feature starting from a gene symbol and array identifier |
| getGene | Retrieves Gene information |
| getGO | Retrieves GO information |
| getHomolog | Get homologs |
| getINTERPRO | Retrieves INTERPRO protein domain information |
| getOMIM | Retrieves OMIM information |
| getPossibleXrefs | Get possible cross-references in Ensembl |
| getSequence | Retrieves sequences |
| getSNP | Retrieves SNP's between a given chromosome start and end position |
| getSpecies | Displays species identifiers currently present in Ensembl |
| getXref | Get cross reference in Ensembl |
| listAttributes | lists the attributes available in the selected dataset |
| listDatasets | lists the datasets available in the selected BioMart database |
| listFilters | lists the filters available in the selected dataset |
| listMarts | list the BioMart database covered by biomaRt package |
| Mart-class | Class Mart |
| martConnect | Connects to available BioMarts |
| martDisconnect | Disconnects from BioMarts |
| martTable-class | Class martTable |
| useDataset | Select a dataset to use and updates Mart object |
| useMart | Connects to the selected BioMart |