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| confint.segmentation | Compute Bai's confidence intervals for specified segmentations |
| costMatrix | Segmentation cost matrix |
| findSegments | Fit a piecewise constant curve to a sequence of numbers |
| getAttributeField | Extract the value of a certain field out of a character vector such as in the "attributes" column of a GFF table. |
| isWithinInterval | Test whether a vector of numbers is within a vector of intervals |
| otherStrand | Return the name of the opposite strand |
| plot.segmentation | Plot result of segmentation algorithm |
| plotAlongChrom | Plot the results of segmentation along a chromosomal region |
| posMin | Find the smallest positive number in a vector |
| qualityReport | Assess quality of normalized poly-A-RNA samples |
| sampleStep | Sampling of ascending numbers to ensure minimal spacing. |
| scoreSegments | Score segments |
| yeastFeatures | A data.frame with metadata about the features in SGD GFF files |