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| arrplot1 | Function to calculate relative mean squares |
| arrplotd | Function for plotting a smoothed histogram |
| arrplote | Function for plotting a cumulative frequency distribution |
| beams | Beam search rountine for finding the optimal parameters |
| dplot | Plotting smoothed histogram |
| dplote | Plotting cumulative frequency distribution |
| genediff | Raw p-value calculation function |
| glog | Generalized log transformation function |
| jggrad2 | Generating Jacobian-corrected data |
| jglog | Glog |
| LMGene | LMGene main function |
| lnorm | Lowess normalization function |
| mlm2lm | Linear Model converting function |
| msa | Relative mean square calculation function |
| msecalc | MSE calculation function |
| neweS | Coercing to exprSet function |
| norm | Additive normalization function |
| pvadjust | P-value adjusting function |
| rgplot | Plotting density function |
| rowaov | Gene by gene anova functioin |
| rowlist | Gene name listing function |
| Smpd | Sample array data for LMGene package |
| Smpd0 | Sample array data for LMGene |
| tranest | Glog transformation parameter estimation function |
| tranest2 | Glog transformation parameter estimation function 2 |
| vlist | Sample experimental data for LMGene package |