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| affxparser-package | Package affxparser |
| affxparser | Package affxparser |
| affxparserInfo | Overview of the Affxparser package. |
| applyCdfGroups | Applies a function over the groups in a CDF structure |
| cdfAddBaseMmCounts | Adds the number of allele A and allele B mismatching nucleotides of the probes in a CDF structure |
| cdfAddProbeOffsets | Adds probe offsets to the groups in a CDF structure |
| cdfGetFields | Gets a subset of groups fields in a CDF structure |
| cdfGtypeCelToPQ | Function to immitate Affymetrix' gtype_cel_to_pq software |
| cdfMergeStrands | Function to join CDF groups with the same names |
| cdfMergeToQuartets | Function to re-arrange CDF groups values in quartets |
| cellindexmaps | Cell index maps for reading and writing |
| cellxy | Cell coordinates and cell indices |
| findCdf | Search for CDF files in multiple directories |
| findFiles | Finds one or several files in multiple directories |
| invertMap | Inverts a read or a write map |
| read.affybatch2 | Read CEL files into an Affybatch |
| readCdf | Parsing a CDF file using Affymetrix Fusion SDK |
| readCdfCellIndices | Reads cell indices of units (probesets) in an Affymetrix CDF file |
| readCdfGroupNames | Reads group names of a set units (probesets) in an Affymetrix CDF file |
| readCdfHeader | Reads the header associated with an Affymetrix CDF file |
| readCdfIsPm | Checks if cells in a CDF file are perfect-match probes or not |
| readCdfNbrOfCellsPerUnitGroup | Gets the number of cells (probes) that each group of each unit in a CDF file |
| readCdfUnitNames | Reads unit (probeset) names from an Affymetrix CDF file |
| readCdfUnits | Reads units (probesets) from an Affymetrix CDF file |
| readCdfUnitsWriteMap | Generates an Affymetrix cell-index write map from a CDF file |
| readCel | Reads an Affymetrix CEL file |
| readCelHeader | Parsing the header of an Affymetrix CEL file |
| readCelIntensities | Reads the intensities contained in several Affymetrix CEL files |
| readCelRectangle | Reads a spatial subset of probe-level data from Affymetrix CEL files |
| readCelUnits | Reads probe-level data ordered as units (probesets) from one or several Affymetrix CEL files |