| read.affybatch2 {affxparser} | R Documentation |
Read CEL files into an Affybatch. An implemetation build on the affxparser package.
read.affybatch2(..., filenames = character(0),
phenoData = new("phenoData"),
description = NULL, notes = "",
compress = getOption("BioC")$affy$compress.cel,
rm.mask = FALSE, rm.outliers = FALSE,
rm.extra = FALSE, verbose = FALSE)
... |
file names separated by comma. |
filenames |
file names in a character vector. |
phenoData |
a phenoData object |
description |
a MIAME object |
notes |
notes. |
compress |
Not currently supported. |
rm.mask |
Not currently supported. |
rm.outliers |
Not currently supported. |
rm.extra |
Not currently supported. |
verbose |
verbosity flag. |
An AffyBatch object.
The author of the original read.affybatch function:
Ben Bolstad, bolstad@stat.berkeley.edu as well as
James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen
khansen@stat.berkeley.edu
read.affybatch in affy as well as
readCelIntensities and readCel.