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| annotation.vandeVijver | Some selected annotations for the breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute, to serve as example data in the globaltest package. |
| checkerboard | Checkerboard plot for Global Test |
| coefficients,mlogit-method | Multinomial Logistic Regression |
| combine | Class "gt.result" for results of the function globaltest |
| combine,gt.result-method | Class "gt.result" for results of the function globaltest |
| fit | Class "gt.result" for results of the function globaltest |
| fit,gt.result-method | Class "gt.result" for results of the function globaltest |
| fitted.values,mlogit-method | Multinomial Logistic Regression |
| geneplot | Gene Plot for Global Test |
| globaltest | Global Test |
| gt.barplot | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| gt.barplot-class | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| gt.multtest | Correct globaltest results for multiple testing |
| gt.result | Class "gt.result" for results of the function globaltest |
| gt.result-class | Class "gt.result" for results of the function globaltest |
| hist,gt.result-method | Class "gt.result" for results of the function globaltest |
| length,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| length,gt.result-method | Class "gt.result" for results of the function globaltest |
| mlogit | Multinomial Logistic Regression |
| mlogit-class | Multinomial Logistic Regression |
| names,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| names,gt.result-method | Class "gt.result" for results of the function globaltest |
| names<-,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| names<-,gt.result-method | Class "gt.result" for results of the function globaltest |
| p.value | Class "gt.result" for results of the function globaltest |
| p.value,gt.result-method | Class "gt.result" for results of the function globaltest |
| permutations | Permutations version of the Global Test |
| plot,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| regressionplot | Regression Plot for Global Test |
| residuals,mlogit-method | Multinomial Logistic Regression |
| result | Class "gt.result" for results of the function globaltest |
| result,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| result,gt.result-method | Class "gt.result" for results of the function globaltest |
| sampleplot | Sample Plot for Global Test |
| sampling | Sampling random 'pathways' for the Global Test |
| scale,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| show,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| show,gt.result-method | Class "gt.result" for results of the function globaltest |
| show,mlogit-method | Multinomial Logistic Regression |
| size | Class "gt.result" for results of the function globaltest |
| size,gt.result-method | Class "gt.result" for results of the function globaltest |
| sort,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| sort,gt.result-method | Class "gt.result" for results of the function globaltest |
| summary,mlogit-method | Multinomial Logistic Regression |
| vandeVijver | A subset of the Breast cancer data from Rosetta Inpharmatics LLC and Netherlands Cancer Institute. |
| z.score | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| z.score,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| z.score,gt.result-method | Class "gt.result" for results of the function globaltest |
| [,gt.barplot-method | Class "gt.barplot" for results of the functions geneplot and sampleplot |
| [,gt.result-method | Class "gt.result" for results of the function globaltest |