| "addParameter-methods" |
Add a column data variable to the data of a FCS object |
| "addParameter-methods",FCS,vector-method |
Class "FCS" : Flow Cytometry Standard |
| "checkvars-methods" |
Checks the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
| "checkvars-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "coerce-methods" |
Coercing an object class to another class |
| "coerce-methods",data.frame,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "coerce-methods",FCS,data.frame-method |
Class "FCS" : Flow Cytometry Standard |
| "coerce-methods",FCS,matrix-method |
Class "FCS" : Flow Cytometry Standard |
| "coerce-methods",matrix,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "dim.FCS-methods" |
Obtaining the dimensions of the data of an "FCS-class" object |
| "dim.FCS-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "equals-methods" |
Checks equality of two "FCS-class" objects |
| "equals-methods",FCS,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "FCS" |
Class "FCS" : Flow Cytometry Standard |
| "FCS-class" |
Class "FCS" : Flow Cytometry Standard |
| "FCSgate" |
Class "FCSgate" Flow Cytometry Standard extension to gating |
| "FCSgate-class" |
Class "FCSgate" Flow Cytometry Standard extension to gating |
| "FCSggobi" |
Class "FCSggobi" : Dynamic Plots |
| "FCSggobi-class" |
Class "FCSggobi" : Dynamic Plots |
| "FCSmetadata" |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "FCSmetadata-class" |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "FCSsummary-class" |
Class "FCSsummary" Summary object for a "FCS-class" |
| "fixvars-methods" |
Checks and fixes the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
| "fixvars-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "fluors-methods" |
Obtaining the Data of Fluorescence Measurements from a FCS object |
| "fluors-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "ggobi-methods" |
Dynamic Plotting and Viewing the "FCS" object data high-dimensionally |
| "ggobi-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "metaData-methods" |
Extraction of the FCSmetadata-class object from a FCS-class object |
| "metaData-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "plot-methods" |
Graphical representation of an object |
| "plot-methods",FCS,missing-method |
Class "FCS" : Flow Cytometry Standard |
| "print-methods" |
Printing an object |
| "print-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "print-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "print-methods",FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
| "show-methods" |
Showing an object |
| "show-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "show-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "show-methods",FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
| "summary-methods" |
Summary of object |
| "summary-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "summary-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[" |
Extraction of slot information using "[" |
| "[",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "["-methods |
Extraction of slot information using "[" |
| "[-methods" |
Extraction of slot information using "[" |
| "[-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "[-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[<-" |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
| "[<-",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[<-"-methods |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
| "[<--methods" |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
| "[<--methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "[<--methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[[" |
Extraction of slot information using "[[" |
| "[[",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[["-methods |
Extraction of slot information using "[[" |
| "[[-methods" |
Extraction of slot information using "[[" |
| "[[-methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "[[-methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[[<-" |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
| "[[<-"-methods |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
| "[[<-"-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| "[[<--methods" |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
| "[[<--methods",FCS-method |
Class "FCS" : Flow Cytometry Standard |
| "[[<--methods",FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| checkvars |
Checks the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
| checkvars,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| checkvars-methods |
Checks the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
| coerce,ANY,array-method |
Coercing an object class to another class |
| coerce,ANY,call-method |
Coercing an object class to another class |
| coerce,ANY,character-method |
Coercing an object class to another class |
| coerce,ANY,complex-method |
Coercing an object class to another class |
| coerce,ANY,environment-method |
Coercing an object class to another class |
| coerce,ANY,expression-method |
Coercing an object class to another class |
| coerce,ANY,function-method |
Coercing an object class to another class |
| coerce,ANY,integer-method |
Coercing an object class to another class |
| coerce,ANY,list-method |
Coercing an object class to another class |
| coerce,ANY,logical-method |
Coercing an object class to another class |
| coerce,ANY,matrix-method |
Coercing an object class to another class |
| coerce,ANY,name-method |
Coercing an object class to another class |
| coerce,ANY,NULL-method |
Coercing an object class to another class |
| coerce,ANY,numeric-method |
Coercing an object class to another class |
| coerce,ANY,single-method |
Coercing an object class to another class |
| coerce,ANY,ts-method |
Coercing an object class to another class |
| coerce,ANY,vector-method |
Coercing an object class to another class |
| coerce,data.frame,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| coerce,FCS,data.frame-method |
Class "FCS" : Flow Cytometry Standard |
| coerce,FCS,matrix-method |
Class "FCS" : Flow Cytometry Standard |
| coerce,matrix,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| coerce-methods |
Coercing an object class to another class |
| colnames,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| colnames<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| ContourScatterPlot |
Image and Contour Bivariate Plot |
| convertS3toS4 |
Converts S3 class FCS object to S4 class FCS object |
| createGate |
Gating of a FCS object: Making a Gating/Selection index column for subsequent extraction |
| cytoSet-class |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| FCS |
Class "FCS" : Flow Cytometry Standard |
| FCS-class |
Class "FCS" : Flow Cytometry Standard |
| FCS.type |
Objects providing parameters for the raw FCS file types |
| fcs.type |
Objects providing parameters for the raw FCS file types |
| fcs.type.cellquest.3.1.FACS.Vantage |
Objects providing parameters for the raw FCS file types |
| fcs.type.cellquest.3.1.FACScan |
Objects providing parameters for the raw FCS file types |
| fcs.type.cellquest.3.3 |
Objects providing parameters for the raw FCS file types |
| fcs.type.default |
Objects providing parameters for the raw FCS file types |
| fcs.type.DiVa1024 |
Objects providing parameters for the raw FCS file types |
| fcs.type.FACSCalibur1024 |
Objects providing parameters for the raw FCS file types |
| fcs.type.facscan1024 |
Objects providing parameters for the raw FCS file types |
| fcs.type.facscan256 |
Objects providing parameters for the raw FCS file types |
| fcs.type.FACStar256 |
Objects providing parameters for the raw FCS file types |
| fcs.type.LSR1024 |
Objects providing parameters for the raw FCS file types |
| fcs.type.LSR256 |
Objects providing parameters for the raw FCS file types |
| fcs.type.LYSYS |
Objects providing parameters for the raw FCS file types |
| FCSgate |
Class "FCSgate" Flow Cytometry Standard extension to gating |
| FCSgate-class |
Class "FCSgate" Flow Cytometry Standard extension to gating |
| FCSggobi |
Class "FCSggobi" : Dynamic Plots |
| FCSggobi-class |
Class "FCSggobi" : Dynamic Plots |
| FCSmetadata |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| FCSmetadata-class |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| FCSsummary |
Class "FCSsummary" Summary object for a "FCS-class" |
| FCSsummary-class |
Class "FCSsummary" Summary object for a "FCS-class" |
| FHCRC.HVTNFCS |
Fred Hutchinson Cancer Research Center Sequential Gating Procedure proposed by Julie McElrath's Lab |
| fixvars |
Checks and fixes the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
| fixvars,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| fixvars-methods |
Checks and fixes the ranges, dimensions, and names of the metadata based on the current data of an FCS R-object. |
| fluors |
Obtaining the Data of Fluorescence Measurements from a FCS object |
| fluors,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| fluors-methods |
Obtaining the Data of Fluorescence Measurements from a FCS object |
| pairs.CSP |
Contour/Hexbin Scatterplot Matrices |
| parallel.coordinates |
Parallel coordinates: Plotting each observation across all variables |
| parallelCoordinates |
Parallel coordinates: Plotting each observation across all variables |
| pData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| percentile.FCS |
Calculate the Percent Positive given a percentile |
| PercentPos.FCS |
Calculate the Percent Positive given a percentile |
| phenoData,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| phenoData<-,cytoSet,phenoData-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| pkci2 |
Testing the difference of upper-tail distributions of two samples |
| plot,ANY,ANY-method |
Graphical representation of an object |
| plot,FCS,missing-method |
Class "FCS" : Flow Cytometry Standard |
| plot-methods |
Graphical representation of an object |
| plot.ProbBin.FCS |
Plots a ProbBin.FCS object |
| plot2sets.FCS |
Create a scatterplot to summaryze and compare two series of FCS objects |
| plotdensity.FCS |
Create density plots one parameter of one (or more) FCS object(s) |
| plotECDF.FCS |
Create a empirical cumulative distribution plot for one (or more) parameter(s) of one (or more) FCS object(s) |
| plotQA.FCS |
Create a scatterplot summaryzing one (or two) parameter(s) for several FCS objects stored in a plate |
| plotvar.FCS |
Making Univariate/Bivariate plots of the column variables of a FCS object |
| print,ANY-method |
Printing an object |
| print,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| print,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| print,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
| print-methods |
Printing an object |
| print-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| print-methods,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
| ProbBin.by.control |
Test the equivalence of two univariate sample distributions by using Probability Binning and plots the probability-binned histograms of the two samples |
| ProbBin.combined |
Test the equivalence of two univariate sample distributions by using Probability Binning and plots the probability-binned histograms of the two samples |
| ProbBin.FCS |
ProbBin.FCS R-object: Probability binning of 2 samples |
| ProbBin.flowcytest |
Test the equivalence of two univariate sample distributions by using Probability Binning and plots the probability-binned histograms of the two samples |
| show,ANY-method |
Showing an object |
| show,classRepresentation-method |
Showing an object |
| show,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| show,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| show,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| show,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
| show,genericFunction-method |
Showing an object |
| show,MethodDefinition-method |
Showing an object |
| show,MethodWithNext-method |
Showing an object |
| show,ObjectsWithPackage-method |
Showing an object |
| show,traceable-method |
Showing an object |
| show-methods |
Showing an object |
| show-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| show-methods,FCSsummary-method |
Class "FCSsummary" Summary object for a "FCS-class" |
| showgate.FCS |
Showing the gate and the datapoints within the gate on a prevous plot |
| standard |
Estimate the critical bandwidth for specific number of modes |
| summary,"ANY-method" |
Summary of object |
| summary,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| summary,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| summary-methods |
Summary of object |
| summary-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| summary.ProbBin.FCS |
Chi-Squared/Standard Normal Approximation Summary Statistics for a ProbBin.FCS object |
| [,ANY-method |
Extraction of slot information using "[" |
| [,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| [,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| [,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [,genericFunction-method |
Extraction of slot information using "[" |
| [-methods |
Extraction of slot information using "[" |
| [-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [<-,ANY-method |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
| [<-,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| [<-,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [<-,genericFunction-method |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
| [<--methods |
Replacement and/or Addition of new slot or indexed elements using "[<-" |
| [<--methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [[,ANY-method |
Extraction of slot information using "[[" |
| [[,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| [[,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| [[,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [[,genericFunction-method |
Extraction of slot information using "[[" |
| [[-methods |
Extraction of slot information using "[[" |
| [[-methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [[<-,ANY-method |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
| [[<-,cytoSet-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
| [[<-,FCS-method |
Class "FCS" : Flow Cytometry Standard |
| [[<-,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |
| [[<-,genericFunction-method |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
| [[<--methods |
Replacement and/or Addition of new slot or indexed elements using "[[<-" |
| [[<--methods,FCSmetadata-method |
Class "FCSmetadata" Metadata portion of a Flow Cytometry Standard object |