| link.genes {siggenes} | R Documentation |
Generates a htmlpage with links to several public repositories for a list of genes.
link.genes(genenames, filename, ll = FALSE, refseq = TRUE, symbol = TRUE,
omim = TRUE, ug = TRUE, chipname = "", cdfname = NULL, dataframe = NULL,
title = NULL, bg.col = "white", text.col = "black", link.col = "blue",
tableborder = 1, new.window = TRUE)
genenames |
a character vector containing the names of the interesting genes |
filename |
a character string naming the file in which the output should be stored. Must have the suffix ".html" |
ll |
logical indicating if Locus Links should be added to the output |
refseq |
logical indicating if RefSeq links should be added to the output |
symbol |
logical indicating if the gene symbols should be added to the output |
omim |
logical indicating if OMIM links should be added to the output |
ug |
logical indicating if UniGene links should be added to the output |
chipname |
character string specifying the chip type used in the analysis. Must
be specified as in the meta-data section of Bioconductor (e.g., "hgu133a"
for the Affymetrix HG-U133A chip). Need not to be specified if cdfname
is specified |
cdfname |
character string specifying the cdf name of the used chip. Must exactly follow
the nomenclatur of the Affymetrix chips (e.g., "HG-U133A" for the
Affymetrix HG-U133A chip). If specified, links to the Affymetrix webpage for the
interesting genes will be added to the output |
dataframe |
matrix having one row for each interesting gene, i.e. nrow(dataframe)
must be equal to length(genenames). This matrix contains additional information
on the list of genes that should be added to the output. If NULL (default) no
information will be added to the link list |
title |
character string naming the title that should be used in the html page |
bg.col |
specification of the background color of the html page. See ?par for
how colors can be specified |
text.col |
specification of the color of the text used in the html page. See ?par for
how colors can be specified |
link.col |
specification of the color of the links used in the html file. See ?par
for how colors can be specified |
tableborder |
integer specifying the thickness of the border of the table |
new.window |
logical indicating if the links should be opened in a new window |
Holger Schwender, holger.schw@gmx.de
SAM-class, sam, link.siggenes, sam2html