Vignettes of package tilingArray

segmentation.pdf:

Identifying transcript boundaries and confidence intervals from high-density Affymetrix genechip expression data, estimation of confidence intervals, and visualization

findsegments.pdf:

A more basic intro to the segment function for fitting a piecewise constant curve

costMatrix.pdf:

Calculation of the cost matrix in the costMatrix function

assessNorm.pdf:

The function normalizeByReference for probe-sequence dependent response adjustment from a (set of) reference hybridizations.