![[R logo]](../../../doc/html/logo.jpg)
| baitsOnly | A function that filters proteins not sampled as baits. |
| bpMatrix | This function generates the Bait-Prey Matrix for an experiment |
| collectBPStats | This function enumerates the multiplicity of bait to prey occurances. |
| collectIntactData | A function that parses the Intact repository for bait to prey affiliation |
| collectMembranePPI | A function to collect the membrane bound protein protein interactions. |
| createBPList | A function to create the Bait to Prey association list. |
| createTables | A function to create a table of the various summary statistics for the Y2H experimental derived data. |
| degreeStats | A function to calculate the various degree statistics on the induced y2h-data derived directed graph. |
| findComplexBP | A function to intersect Y2H data with protein complex composition data |
| genBPGraph | A function to generate the Y2H induced adjcency matrix or its corresponding graph |
| inNucleus | A function to determine those proteins annotated by the nucleus GO term. |
| intAct2Sys | A function that maps the Intact ID's to the first YEAST systematic name using the YEAST package |
| intActData | A data set documenting the output of collectIntactData |
| map2Systematic | A function that maps the Intact ID's to Yeast Systematic Names if possible |
| map2Systematic2 | A secondary function that maps the Intact ID's to Yeast Systematic Names if possible |
| membranePPI | Binary Interactions for membrane bound proteins |
| nucStat | A function to restrict the indexing set of bait prey adjcency matrices |
| ppipred | Protein-protein predictions |
| recipBP | A function that returns all preys which were sampled as baits that also detected non-trivial preys. |
| sWAC2Sys | A data set that contains the translation between Swiss Acension Codes to Gene Systematic Names |
| symInteraction | A function that returns symmetric bait to prey interactions from the y2h experiments. |
| tableList | A list of tables for the downloaded and parsed xml files from the IntAct database |
| y2h | A data set documenting the bait to prey associations for the IntAct repository |
| y2hSysGW | A Binary Interaction List for Yeast Proteins via Systematic Names |