| PFAM-class {AnnBuilder} | R Documentation |
This class is a sub-class of pubRepo that is implemented specifically to parse the data ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
Objects can be created by calls of the form new("PFAM", ...).
A constructor (PFAM) is available and should be used to instatiate
objects of PFAM
srcUrl:"character", from class
"pubRepo" a character string for the surce url where data
will be downloaded/processedfromWeb:"logical" for
inficating whether the source file should be accessed through the
web or locally
Class "pubRepo", directly.
signature(object = "PFAM"): A method to parse
a source file using a specified parserTing-Yuan Liu
ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz
## Not run:
## create PFAM class
pfamObj <- PFAM(srcUrl="ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/Pfam-A.full.gz",
fromWeb=TRUE)
tableList <- parseData(pfamObj)
## End(Not run)