| readEmblDescript {GeneR} | R Documentation |
Read features from an Embl bank file
readEmblDescript(file, name = NA, code = "DE")
file |
String/scalar, File name of the bank (example: "foo.embl") |
name |
String/scalar, Sequence name (default : first sequence) |
code |
String/scalar, feature code to look for (i.e. "CC", "DE", "CC", etc...) |
A vector of character string.
Antoine Lucas
## Not run:
download.file("http://bioinfo.hku.hk/sars/AY291451.seq",
destfile="AY291451.seq")
readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="DE")
## returns: "SARS coronavirus TW1, complete genome."
readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="OC")
## returns: "Viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirus; SARS coronavirus."
readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="RA")
##[1] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;"
##[2] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;"
## End(Not run)