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| apEX | Example data set for apComplex package |
| apEXG | Example data set for apComplex package |
| bhmaxSubgraph | Find maximal BH-complete subgraph |
| findComplexes | Estimate a Protein Complex Membership Graph (PCMG) using protein complex comembership data from AP-MS technology |
| gavinBP2006 | Tandem Affinity Purification (TAP) Data from Gavin et al. (2006) |
| gavinBP2006graph | Tandem Affinity Purification (TAP) Data from Gavin et al. (2006) |
| HMSPCI | High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002) |
| HMSPCIgraph | High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002) |
| Krogan | High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004) |
| kroganBPMat2006 | Tandem Affinity Purification (TAP) Data from Krogan et al. (2006) |
| LCdelta | Computes change in LxC measure |
| MBMEcHMSPCI | HMSPCI data complex estimates |
| MBMEcKrogan | Krogan data complex estimates |
| MBMEcTAP | TAP data complex estimates |
| mergeComplexes | Iteratively combine columns in initial PCMG estimate |
| reduceMat | Remove matrix columns |
| SBMHcHMSPCI | HMSPCI data complex estimates |
| SBMHcTAP | TAP data complex estimates |
| sortComplexes | Sort complex estimates |
| TAP | Tandem Affinity Purification (TAP) Data from Gavin et al. (2002) |
| TAPgraph | Tandem Affinity Purification (TAP) Data from Gavin et al. (2002) |
| UnRBBcHMSPCI | HMSPCI data complex estimates |
| UnRBBcTAP | TAP data complex estimates |
| vecInMat | Vector in Matrix |
| whichVecInMat | Vector in Matrix |
| yNameTAP | TAP data complex estimates using standard gene names |
| yTAP | yTAP Complexes published Gavin, et al. (2002). |