| Submatrix-class {pairseqsim} | R Documentation |
Amino Acid Substitution Matrices
new("Submatrix", ...).
or data(EPAM100
.Data:"matrix" substitution matrix copyright:"character" GNU GPL2 info:"character" namehead:"character" descriptionalphabet:"character" alphabet
Class "matrix", directly.
signature(object = "AASequence", sub =
"Submatrix"): compute teh score for aligning the sequence with itself signature(object = "Submatrix"): showsignature(object = "Submatrix", path =
"character"): read Substitution matrices from EMBOSS package Witold Eryk Wolski http://r4proteomics.sourceforge.net witek96@users.sourceforge.net
http://www.hgmp.mrc.ac.uk/Software/EMBOSS/overview.html