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| assessSymmetry | A function that calcualtes some directed degree statistics on graphs using a binomial error model |
| bpMatrix | This function generates the Bait-Prey Matrix for an protein-protein interaction (ppi) experiment |
| calcInOutDegStats | This function calculates the various degree statistic for a Protein-Protein Interaction (PPI) Graph |
| estErrProbMethodOfMoments | Estimate false positive and false negative error probabilities by method moments. |
| genBPGraph | A function to generate the protein-protein interaction (ppi) induced (un)directed graph |
| idHomodimers | A function to determine viable baits, viable preys, or homodimers within experimental data-sets. |
| idStochastic | A function to identify those proteins affected by either stochastic or systematic errors |
| idSystematic | A function to identify those proteins affected by either stochastic or systematic errors |
| idViableProteins | A function to determine viable baits, viable preys, or homodimers within experimental data-sets. |
| nullDistDoublyTestedEdges | Null distribution of number of reciprocated, unreciprocated and missing edges in stochastic model. |