| revish {reb} | R Documentation |
This function returns a two lists of character strings. These two lists correspond to the enhanced and diminished chromosomal bands.
revish(cset, genome, chr, organism = NULL)
cset |
expression set containing cytogenetic predictions, see reb |
genome |
chromLocation object containing annotation information |
chr |
chromosome to examine |
organism |
if NULL, determination of the host organism will be
retrieved from the organism slot of the chromLocation
object. Otherwise "h", "r", or "m" can be used to
specify human, rat, or mouse chromosome
information |
enh |
list of enhanced bands on each individual sample |
dim |
list of diminished bands on each individual sample |
Karl J. Dykema, karl.dykema@vai.org Kyle A. Furge, kyle.furge@vai.org
Furge KA, Dykema KJ, Ho C, Chen X. Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma. BMC Genomics. 2005 May 9;6(1):67. PMID: 1588246
MCR eset data was obtained with permission. See PMID: 15377468
data(idiogramExample) ix <- abs(colo.eset@exprs) > .225 colo.eset@exprs[ix] <- NA idiogram(colo.eset@exprs,ucsf.chr,"14",method="i",dlim=c(-1,1),col=.rwb) revlist<- revish(colo.eset@exprs,ucsf.chr,"14") str(revlist)