| aaMap |
Dataset: Names and Characteristics of Amino Acids |
| abstract |
Retrieve feature and sample names from eSets and exprSets. |
| abstract,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| abstract,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| abstract,MIAME-method |
Class for Storing Microarray Experiment Information |
| addVigs2WinMenu |
Add Menu Items to an Existing/New Menu of Window |
| aggenv,aggregator-method |
A Simple Class for Aggregators |
| aggfun,aggregator-method |
A Simple Class for Aggregators |
| Aggregate |
A Simple Aggregation Mechanism. |
| aggregator |
A Simple Class for Aggregators |
| aggregator-class |
A Simple Class for Aggregators |
| AnnotatedDataFrame |
Class Containing Measured Variables and Their Meta-Data Description. |
| AnnotatedDataFrame-class |
Class Containing Measured Variables and Their Meta-Data Description. |
| annotatedDataFrameFrom |
Methods for Function annotatedDataFrameFrom in Package `Biobase' |
| annotatedDataFrameFrom,AssayData-method |
Methods for Function annotatedDataFrameFrom in Package `Biobase' |
| annotatedDataFrameFrom,matrix-method |
Methods for Function annotatedDataFrameFrom in Package `Biobase' |
| annotatedDataFrameFrom,NULL-method |
Methods for Function annotatedDataFrameFrom in Package `Biobase' |
| annotatedDataset |
Virtual superset for 'exprSet'. |
| annotatedDataset-class |
Virtual superset for 'exprSet'. |
| annotation |
Annotate eSet data. |
| annotation,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| annotation,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| annotation<-,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| annotation<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
| as.data.frame.ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| as.data.frame.exprSet |
Class for Microarray Data and Methods for Processing Them |
| as.data.frame.exprSet,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| AssayData |
Class "AssayData" |
| assayData |
Retrieve assay data from eSets and exprSets. |
| assayData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| assayData,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| AssayData-class |
Class "AssayData" |
| assayData<-,eSet,AssayData-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| assayDataElement |
Class to Contain High-Throughput Assays and Experimental Metadata |
| assayDataElementNames |
Class to Contain High-Throughput Assays and Experimental Metadata |
| assayDataElementReplace |
Class to Contain High-Throughput Assays and Experimental Metadata |
| assayDataNew |
Class "AssayData" |
| assayDataValidMembers |
Class "AssayData" |
| cache |
Evaluate an expression if its value is not already cached. |
| characterORMIAME-class |
Class to Make Older Versions Compatible |
| class:aggregator |
A Simple Class for Aggregators |
| class:AnnotatedDataFrame |
Class Containing Measured Variables and Their Meta-Data Description. |
| class:annotatedDataset |
Virtual superset for 'exprSet'. |
| class:characterORMIAME |
Class to Make Older Versions Compatible |
| class:container |
A Lockable List Structure with Constraints on Content |
| class:eSet |
Class to Contain High-Throughput Assays and Experimental Metadata |
| class:ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| class:exprList |
Class Union of a List and an Environment |
| class:exprMatrix |
Class Union for Objects Behaving Like a Matrix |
| class:exprSet |
Class for Microarray Data and Methods for Processing Them |
| class:MIAME |
Class for Storing Microarray Experiment Information |
| class:MultiSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| class:phenoData |
Class For Patient or Experiment Level Data |
| class:SnpSet |
Class to Contain Objects Describing High-Throughput SNP Assays. |
| classVersion |
Retrieve information about versioned classes |
| classVersion,ANY-method |
Retrieve information about versioned classes |
| classVersion,character-method |
Retrieve information about versioned classes |
| classVersion,Versioned-method |
Class "Versioned" |
| classVersion<-,Versioned,Versions-method |
Class "Versioned" |
| coerce,data.frame,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| coerce,data.frame,phenoData-method |
Class For Patient or Experiment Level Data |
| coerce,eSet,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| coerce,eSet,MultiSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| coerce,ExpressionSet,data.frame-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| coerce,exprSet,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| coerce,exprSet,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| coerce,phenoData,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| coerce,Versions,character-method |
Class "Versions" |
| combine |
Methods for Function combine in Package `Biobase' |
| combine,AnnotatedDataFrame,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| combine,AssayData,AssayData-method |
Class "AssayData" |
| combine,data.frame,data.frame-method |
Methods for Function combine in Package `Biobase' |
| combine,eSet,ANY-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| combine,eSet,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| combine,MIAME,MIAME-method |
Class for Storing Microarray Experiment Information |
| combine,phenoData,ANY-method |
Class For Patient or Experiment Level Data |
| combine,phenoData,phenoData-method |
Class For Patient or Experiment Level Data |
| Compare,character,Versions-method |
Class "Versions" |
| Compare,Versions,character-method |
Class "Versions" |
| Compare,Versions,Versions-method |
Class "Versions" |
| container |
A Lockable List Structure with Constraints on Content |
| container-class |
A Lockable List Structure with Constraints on Content |
| content,container-method |
A Lockable List Structure with Constraints on Content |
| contents |
Function to retrieve contents of environments |
| convertVarLabels,phenoData-method |
Class For Patient or Experiment Level Data |
| copyEnv |
List-Environment interactions |
| copySubstitute |
Copy Between Connections or Files with Configure-Like Name-Value Substitution |
| createPackage |
Create a Package Directory from a Template |
| data:aaMap |
Dataset: Names and Characteristics of Amino Acids |
| data:eset |
(Deprecated) dataset of class 'exprSet' |
| data:geneData |
Sample expression matrix and phenotype data.frames. |
| data:sample.eSet |
(Deprecated) dataset of class 'eSet' |
| data:sample.ExpressionSet |
Dataset of class 'ExpressionSet' |
| data:sample.exprSet |
Dataset of class 'exprSet' |
| data:sample.exprSet.1 |
Dataset of class 'exprSet' |
| description |
Retrieve and set overall experimental information eSet-like classes. |
| description,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| description,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| description<-,eSet,MIAME-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| description<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
| dim,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| dim,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| dimLabels |
Class Containing Measured Variables and Their Meta-Data Description. |
| dimLabels,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| dims |
Retrieve dimensions of all elements in a list or environment |
| dims,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| dumpPackTxt |
Dump Textual Description of a Package |
| esApply |
Apply for the Expression Data in 'exprSet' |
| eSet |
Class to Contain High-Throughput Assays and Experimental Metadata |
| eset |
(Deprecated) dataset of class 'exprSet' |
| eSet-class |
Class to Contain High-Throughput Assays and Experimental Metadata |
| experimentData |
Retrieve feature and sample names from eSets and exprSets. |
| experimentData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| experimentData<-,eSet,MIAME-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| expinfo,MIAME-method |
Class for Storing Microarray Experiment Information |
| ExpressionSet |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| ExpressionSet-class |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| exprMatrix-class |
Class Union for Objects Behaving Like a Matrix |
| exprs |
Retrieve expression data from eSets. |
| exprs,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| exprs,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| exprs,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| exprs,SnpSet-method |
Class to Contain Objects Describing High-Throughput SNP Assays. |
| exprs2excel |
Class for Microarray Data and Methods for Processing Them |
| exprs2excel,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| exprs<-,eSet,AssayData-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| exprs<-,ExpressionSet,matrix-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| exprs<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
| exprs<-,SnpSet,matrix-method |
Class to Contain Objects Describing High-Throughput SNP Assays. |
| exprSet |
Class for Microarray Data and Methods for Processing Them |
| exprSet-class |
Class for Microarray Data and Methods for Processing Them |
| featureData |
Class to Contain High-Throughput Assays and Experimental Metadata |
| featureData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| featureData<-,eSet,AnnotatedDataFrame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| featureNames |
Retrieve feature and sample names from eSets and exprSets. |
| featureNames,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| featureNames,AssayData-method |
Class "AssayData" |
| featureNames,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| featureNames,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| featureNames<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| featureNames<-,AssayData-method |
Class "AssayData" |
| featureNames<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| featureNames<-,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| geneCovariate |
Sample expression matrix and phenotype data.frames. |
| geneData |
Sample expression matrix and phenotype data.frames. |
| geneNames |
Retrieve feature and sample names from eSets and exprSets. |
| geneNames,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| geneNames,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| geneNames<-,ExpressionSet,character-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| geneNames<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
| getExpData,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| getObjectSlots |
Update an object to its current class definition |
| getPkgVigs |
List Vignette Files for a Package |
| getVarMetadata |
Class For Patient or Experiment Level Data |
| getVarMetadata,phenoData,character,character-method |
Class For Patient or Experiment Level Data |
| getVarMetadata,phenoData,character,missing-method |
Class For Patient or Experiment Level Data |
| golubMergeSub |
Class to Contain High-Throughput Assays and Experimental Metadata |
| initfun,aggregator-method |
A Simple Class for Aggregators |
| initialize,aggregator-method |
A Simple Class for Aggregators |
| initialize,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| initialize,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| initialize,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| initialize,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| initialize,MultiSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| initialize,phenoData-method |
Class For Patient or Experiment Level Data |
| initialize,SnpSet-method |
Class to Contain Objects Describing High-Throughput SNP Assays. |
| initialize,Versioned-method |
Class "Versioned" |
| initialize,Versions-method |
Class "Versions" |
| initialize,VersionsNull-method |
Class "VersionsNull" |
| intitialize,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| isCurrent |
Use version information to test whether class is current |
| isCurrent,ANY,ANY-method |
Use version information to test whether class is current |
| isCurrent,MIAME,missing-method |
Class for Storing Microarray Experiment Information |
| isCurrent,Versioned,character-method |
Class "Versioned" |
| isCurrent,Versioned,missing-method |
Class "Versioned" |
| isUnique |
Determine Unique Elements |
| isVersioned |
Determine whether object or class contains versioning information |
| isVersioned,ANY-method |
Determine whether object or class contains versioning information |
| isVersioned,character-method |
Determine whether object or class contains versioning information |
| isVersioned,Versioned-method |
Class "Versioned" |
| iter,exprSet,character,function-method |
Class for Microarray Data and Methods for Processing Them |
| iter,exprSet,missing,function-method |
Class for Microarray Data and Methods for Processing Them |
| iter,exprSet,missing,list-method |
Class for Microarray Data and Methods for Processing Them |
| ncol,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| ncol,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| normControls,MIAME-method |
Class for Storing Microarray Experiment Information |
| note |
Informational Messages |
| notes |
Retrieve and set eSet and exprSet notes. |
| notes,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| notes,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| notes,MIAME-method |
Class for Storing Microarray Experiment Information |
| notes<-,eSet,ANY-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| notes<-,exprSet,ANY-method |
Class for Microarray Data and Methods for Processing Them |
| notes<-,MIAME,character-method |
Class for Storing Microarray Experiment Information |
| notes<-,MIAME,list-method |
Class for Storing Microarray Experiment Information |
| package.version |
Report Version of a Package |
| pData |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
| pData,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| pData,annotatedDataset-method |
Virtual superset for 'exprSet'. |
| pData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| pData,phenoData-method |
Class For Patient or Experiment Level Data |
| pData<-,AnnotatedDataFrame,data.frame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| pData<-,annotatedDataset,ANY-method |
Virtual superset for 'exprSet'. |
| pData<-,eSet,data.frame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| pData<-,phenoData,ANY-method |
Class For Patient or Experiment Level Data |
| phenoData |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
| phenoData,annotatedDataset-method |
Virtual superset for 'exprSet'. |
| phenoData,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| phenoData-class |
Class For Patient or Experiment Level Data |
| phenoData<-,annotatedDataset,phenoData-method |
Class For Patient or Experiment Level Data |
| phenoData<-,eSet,AnnotatedDataFrame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| preproc |
Class for Storing Microarray Experiment Information |
| preproc,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| preproc,MIAME-method |
Class for Storing Microarray Experiment Information |
| preproc<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| preproc<-,MIAME-method |
Class for Storing Microarray Experiment Information |
| pubMedIds |
Retrieve feature and sample names from eSets and exprSets. |
| pubMedIds,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| pubMedIds,MIAME-method |
Class for Storing Microarray Experiment Information |
| pubMedIds<-,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| pubMedIds<-,MIAME,ANY-method |
Class for Storing Microarray Experiment Information |
| read.AnnotatedDataFrame |
Read 'AnnotatedDataFrame' |
| read.exprSet |
Read Experimental Data and into an 'exprSet' Object |
| read.MIAME |
Read MIAME Information into an Instance of Class 'MIAME' |
| read.phenoData |
Read 'phenoData' |
| readExpressionSet |
Read 'ExpressionSet' |
| reporter |
Example Data Frame Object for the ReporterInfo Slot |
| reporterInfo |
Retrieve and set information about reporters. |
| reporterInfo,annotatedDataset-method |
Virtual superset for 'exprSet'. |
| reporterInfo<-,annotatedDataset,data.frame-method |
Virtual superset for 'exprSet'. |
| reporterNames,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| reverseSplit |
A function to reverse the role of names and values in a list. |
| rowMax |
A function to compute empirical row quantiles. |
| rowMedians |
A function to compute empirical row quantiles. |
| rowMedians,ExpressionSet-method |
A function to compute empirical row quantiles. |
| rowMedians,exprSet-method |
A function to compute empirical row quantiles. |
| rowMedians,matrix-method |
A function to compute empirical row quantiles. |
| rowMin |
A function to compute empirical row quantiles. |
| rowQ |
A function to compute empirical row quantiles. |
| rowQ,ExpressionSet,numeric-method |
A function to compute empirical row quantiles. |
| rowQ,exprSet,numeric-method |
A function to compute empirical row quantiles. |
| rowQ,matrix,numeric-method |
A function to compute empirical row quantiles. |
| sample.eSet |
(Deprecated) dataset of class 'eSet' |
| sample.ExpressionSet |
Dataset of class 'ExpressionSet' |
| sample.exprSet |
Dataset of class 'exprSet' |
| sample.exprSet.1 |
Dataset of class 'exprSet' |
| sampleNames |
Retrieve feature and sample names from eSets and exprSets. |
| sampleNames,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| sampleNames,AssayData-method |
Class "AssayData" |
| sampleNames,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| sampleNames,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| sampleNames<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| sampleNames<-,AssayData-method |
Class "AssayData" |
| sampleNames<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| sampleNames<-,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| samples |
Class for Storing Microarray Experiment Information |
| samples,MIAME-method |
Class for Storing Microarray Experiment Information |
| ScalarCharacter-class |
A length one (scalar) character class |
| se.exprs |
Retrieve expression data from eSets. |
| se.exprs,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| se.exprs<-,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| seD |
Sample expression matrix and phenotype data.frames. |
| selectSome |
extract aspects of a vector for concise rendering |
| show,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| show,container-method |
A Lockable List Structure with Constraints on Content |
| show,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| show,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| show,MIAME-method |
Class for Storing Microarray Experiment Information |
| show,phenoData-method |
Class For Patient or Experiment Level Data |
| show,Versioned-method |
Class "Versioned" |
| show,Versions-method |
Class "Versions" |
| show,VersionsNull-method |
Class "VersionsNull" |
| SnpSet |
Class to Contain Objects Describing High-Throughput SNP Assays. |
| SnpSet-class |
Class to Contain Objects Describing High-Throughput SNP Assays. |
| split |
Class for Microarray Data and Methods for Processing Them |
| split,exprSet,factor,missing-method |
Class for Microarray Data and Methods for Processing Them |
| split,exprSet,vector,missing-method |
Class for Microarray Data and Methods for Processing Them |
| split,phenoData,vector,missing-method |
Class For Patient or Experiment Level Data |
| storageMode |
Retrieve or set storage mode for eSets. |
| storageMode,AssayData-method |
Class "AssayData" |
| storageMode,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| storageMode<-,AssayData,character-method |
Class "AssayData" |
| storageMode<-,eSet,character-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| strbreak |
Break Character Strings to Fit Width |
| SW |
Class to Contain High-Throughput Assays and Experimental Metadata |
| SWPD |
Class to Contain High-Throughput Assays and Experimental Metadata |
| swrep |
Class to Contain High-Throughput Assays and Experimental Metadata |
| update2MIAME |
Class for Microarray Data and Methods for Processing Them |
| update2MIAME,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| updateObject |
Update an object to its current class definition |
| updateObject,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| updateObject,ANY-method |
Update an object to its current class definition |
| updateObject,environment-method |
Update an object to its current class definition |
| updateObject,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| updateObject,ExpressionSet-method |
Class to Contain and Describe High-Throughput Expression Level Assays. |
| updateObject,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| updateObject,list-method |
Update an object to its current class definition |
| updateObject,MIAME-method |
Class for Storing Microarray Experiment Information |
| updateObject,phenoData-method |
Class For Patient or Experiment Level Data |
| updateObject,Versions-method |
Class "Versions" |
| updateObjectFromSlots |
Update an object to its current class definition |
| updateObjectTo |
Update an object to its current class definition |
| updateObjectTo,ANY,ANY-method |
Update an object to its current class definition |
| updateObjectTo,eSet,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| updateOldESet |
Update previously created eSet object to current eSet structure |
| userQuery |
A function to query the user for input |
| varLabels |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
| varLabels,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| varLabels,annotatedDataset-method |
Virtual superset for 'exprSet'. |
| varLabels,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| varLabels,phenoData-method |
Class For Patient or Experiment Level Data |
| varLabels<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| varLabels<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| varMetadata |
Retrieve information on experimental phenotypes recorded in eSet and exprSet-derived classes. |
| varMetadata,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| varMetadata,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| varMetadata,phenoData-method |
Class For Patient or Experiment Level Data |
| varMetadata<-,AnnotatedDataFrame,data.frame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| varMetadata<-,eSet,data.frame-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| Versioned |
Class "Versioned" |
| Versioned-class |
Class "Versioned" |
| VersionedBiobase |
Class "VersionedBiobase" |
| VersionedBiobase-class |
Class "VersionedBiobase" |
| Versions |
Class "Versions" |
| Versions-class |
Class "Versions" |
| VersionsNull |
Class "VersionsNull" |
| VersionsNull-class |
Class "VersionsNull" |
| [,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| [,container-method |
A Lockable List Structure with Constraints on Content |
| [,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| [,exprSet-method |
Class for Microarray Data and Methods for Processing Them |
| [,phenoData-method |
Class For Patient or Experiment Level Data |
| [,Versions-method |
Class "Versions" |
| [<-,Versions-method |
Class "Versions" |
| [[,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| [[,annotatedDataset-method |
Virtual superset for 'exprSet'. |
| [[,container-method |
A Lockable List Structure with Constraints on Content |
| [[,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| [[,phenoData-method |
Class For Patient or Experiment Level Data |
| [[<-,AnnotatedDataFrame-method |
Class Containing Measured Variables and Their Meta-Data Description. |
| [[<-,annotatedDataset-method |
Virtual superset for 'exprSet'. |
| [[<-,container-method |
A Lockable List Structure with Constraints on Content |
| [[<-,eSet-method |
Class to Contain High-Throughput Assays and Experimental Metadata |
| [[<-,phenoData-method |
Class For Patient or Experiment Level Data |
| [[<-,Versions-method |
Class "Versions" |