| oGtypeExSet-class {GGtools} | R Documentation |
Experimental class for combining oligo SnpCallSet with ExpressionSet
Objects can be created by calls of the form new("oGtypeExSet",
snpCalls=list(), dbConns=list(), x)
where x is an ExpressionSet instance.
snpCalls:"list" named
list of SnpCallSet instances dbConns:"list" list
of SQLite connections for SNP annotation structures assayData:"AssayData" from expression data phenoData:"AnnotatedDataFrame" ~~ featureData:"AnnotatedDataFrame" ~~ experimentData:"MIAME" ~~ annotation:"character" ~~ .__classVersion__:"Versions" ~~
Class "ExpressionSet", directly.
Class "eSet", by class "ExpressionSet", distance 2.
Class "VersionedBiobase", by class "ExpressionSet", distance 3.
Class "Versioned", by class "ExpressionSet", distance 4.
No methods defined with class "oGtypeExSet" in the signature.
addAnno, getSNPindices, and tx.rsnum need further development.
VJ Carey <stvjc@channing.harvard.edu>
# use new("oGtypeExSet", snpCalls=list(Nsp=nspCalls, Sty=styCalls),
# dbConns=list(), x3pSet)
showClass("oGtypeExSet")