| addFeatureData |
Method for Function addFeatureData |
| addFeatureData,eSet-method |
Method for Function addFeatureData |
| addFeatureData-methods |
Method for Function addFeatureData |
| alleleA |
Accessor for the A allele |
| alleleA,AnnotatedDataFrame-method |
Accessor for the A allele |
| alleleA,AnnotatedSnpCopyNumberSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| alleleA,AnnotatedSnpSet-method |
Class "AnnotatedSnpSet" |
| alleleA,oligoSnpSet-method |
Accessor for the A allele |
| alleleA,SnpCallSet-class |
Class "AnnotatedSnpCallSet" |
| alleleA,SnpCallSet-method |
Accessor for the A allele |
| alleleA,SnpCopyNumberSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| alleleB |
Accessor for the B allele |
| alleleB,AnnotatedDataFrame-method |
Accessor for the B allele |
| alleleB,AnnotatedSnpCopyNumberSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| alleleB,AnnotatedSnpSet-method |
Class "AnnotatedSnpSet" |
| alleleB,oligoSnpSet-method |
Accessor for the B allele |
| alleleB,SnpCallSet-class |
Class "AnnotatedSnpCallSet" |
| alleleB,SnpCallSet-method |
Accessor for the B allele |
| alleleB,SnpCopyNumberSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| AnnotatedSnpCallSet-class |
Class "AnnotatedSnpCallSet" |
| AnnotatedSnpCopyNumberSet-class |
Class "AnnotatedSnpCopyNumberSet" |
| AnnotatedSnpSet-class |
Class "AnnotatedSnpSet" |
| annSnpset |
AnnotatedSnpSet object |
| centromere |
Coordinates of centromere |
| chromosome |
Accessor for chromosome SNP annotation |
| chromosome,AnnotatedDataFrame-method |
Accessor for chromosome SNP annotation |
| chromosome,AnnotatedSnpCopyNumberSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| chromosome,AnnotatedSnpSet-method |
Class "AnnotatedSnpSet" |
| chromosome,oligoSnpSet-method |
Accessor for chromosome SNP annotation |
| chromosome,SnpCallSet-method |
Accessor for chromosome SNP annotation |
| chromosome,SnpCopyNumberSet-method |
Accessor for chromosome SNP annotation |
| chromosome-methods |
Accessor for chromosome SNP annotation |
| chromosomeAnnotation |
chromosome annotation |
| chromosomeAnnotation,AnnotatedSnpCallSet-method |
Class "AnnotatedSnpCallSet" |
| chromosomeAnnotation,AnnotatedSnpCopyNumberSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| chromosomeAnnotation,AnnotatedSnpSet-method |
Class "AnnotatedSnpSet" |
| chromosomeAnnotation<-,AnnotatedSnpCallSet,data.frame-method |
Class "AnnotatedSnpCallSet" |
| chromosomeAnnotation<-,AnnotatedSnpCopyNumberSet,data.frame-method |
Class "AnnotatedSnpCopyNumberSet" |
| chromosomeAnnotation<-,AnnotatedSnpSet,data.frame-method |
Class "AnnotatedSnpSet" |
| chromosomeSize |
Get size of chromosome in number of base pairs. |
| coerce,AnnotatedSnpCopyNumberSet,AnnotatedSnpSet-method |
Class "AnnotatedSnpCopyNumberSet" |
| coerce,AnnotatedSnpSet,AnnotatedSnpCopyNumberSet-method |
Class "AnnotatedSnpSet" |
| coerce,oligoSnpSet,AnnotatedSnpSet-method |
Methods for Function coerce |
| coerce-methods |
Methods for Function coerce |
| copyNumber,SnpQSet-method |
Extracts copy number estimates |
| copyNumber-methods |
Extracts copy number estimates |
| cytoband |
Start and stop sites of cytoband |