| BeadLevelList-class {beadarray} | R Documentation |
A class for storing red and green channel foreground and background intensities from an Illumina experiment.
Objects can be created by calls of the form new("BeadLevelList"), but are usually created by readIllumina.
Objects of this class contain the following slots
beadData: | an environment for storing the raw bead-level data. Each item stored in beadData is a data.frame which can be accessed by BLData[[1]]. Each row correspond to a bead and columns the data. |
phenoData: | an 'AnnotatedDataFrame' containing experimental information. |
arrayInfo: | a list containing array information. |
beadAnno: | a data.frame containing Bead annotation information. |
scanMetrics: | a data.frame containing scanner information. |
signature(.Object = "BeadLevelList") copyBeadLevelList(object)BeadLevelList objectarrayNames(object)BeadLevelList objectcombineBeadLevelLists(object1,object2)BeadLevelList objects into onegetArrayData(object,which="G",log=TRUE)which intensities on the log scale from the
BeadLevelListnumBeads(object)pData(object)phenoData(object)Mark Dunning