| filterSummary {biomaRt} | R Documentation |
Filters in BioMart databases are grouped together in filter groups and filter groups can in their turn form a higher collection in an filter category. The filterSummary function gives a summary of the filter categories and groups present in the BioMart. These group and category names can be used to display only a subset of the available filters in the listFilters function.
filterSummary(mart)
mart |
object of class Mart, containing connections to the BioMart database. You have to create such an object using the function useMart and update this Mart object by selecting a dataset. |
Steffen Durinck
if(interactive()){
#marts <- listMarts()
#index<-grep("ensembl",marts)
#mart <- useMart(marts[index])
#datasets <- listDatasets(mart)
#mart <- useDataset(datasets[1],mart = mart)
#filterSummary(mart)
}