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| array.subset | Given an expression object get a particular subset of arrays defined by the phenoData |
| array.subset,AffyBatch-method | Given an expression object get a particular subset of arrays defined by the phenoData |
| array.subset,exprSet-method | Given an expression object get a particular subset of arrays defined by the phenoData |
| col.rd.bl | Use the X:MAP database to find annotated gene structure and generate a plot |
| dbHuman | Switching between databases |
| dbMouse | Switching between databases |
| exclude.probewise | Filtering of lists of probesets |
| exon.details | Use the X:MAP database to get detailed annotation for genes, transcripts and exons |
| exon.to.gene | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| exon.to.probeset | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| exon.to.transcript | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| fc | Simple pariwise comparisons on exon expression data |
| fc,PC-method | Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
| fval | Find probesets involved in differential splicing for multiple treatments |
| fval,Splanova-method | Class "Splanova" represents the result of a splicing anova calculations |
| gene.details | Use the X:MAP database to get detailed annotation for genes, transcripts and exons |
| gene.legend | Add a colour bar to an X:MAP gene plot |
| gene.strip | Use the X:MAP database to find annotated gene structure and generate a plot for multiple genes |
| gene.to.exon | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| gene.to.exon.probeset | Using X:MAP database to translate genes into exons and probesets |
| gene.to.probeset | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| gene.to.transcript | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| genes.in.range | Find probesets and genes by location |
| group.indices | Given an expression object get the array indices for a particular set of arrays |
| pc | Simple pariwise comparisons on exon expression data |
| PC-class | Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
| plot.gene | Use the X:MAP database to find annotated gene structure and generate a plot |
| plot.gene.graph | Use the X:MAP database to find annotated gene structure and generate a plot |
| probes.only.in.range | Find probesets and genes by location |
| probeset.stats | Generates summary statistics showing intron, exon and gene hits for the spefied probeset list |
| probeset.to.exon | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| probeset.to.gene | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| probeset.to.probe | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| probeset.to.transcript | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| probesets.in.eset | Filtering of lists of probesets |
| probesets.in.range | Find probesets and genes by location |
| read.exon | Read a Set of .CEL Files and Phenotypic Data representing exon arrays |
| select.probewise | Filtering of lists of probesets |
| showXmapDatabase | Switching between databases |
| sig | Find probesets involved in differential splicing for multiple treatments |
| sig,Splanova-method | Class "Splanova" represents the result of a splicing anova calculations |
| splanova | Find probesets involved in differential splicing for multiple treatments |
| Splanova-class | Class "Splanova" represents the result of a splicing anova calculations |
| splicing.index | Find probesets involved in differential splicing for two treatments |
| symbol.to.gene | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| symbol.to.probeset | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| transcript.details | Use the X:MAP database to get detailed annotation for genes, transcripts and exons |
| transcript.to.exon | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| transcript.to.gene | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| transcript.to.probeset | Use the X:MAP database to translate between genes, transcripts, exons, probesets and probes |
| tt | Simple pariwise comparisons on exon expression data |
| tt,PC-method | Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
| x.rma | Sample exonmap dataset |
| xmapDatabase | Switching between databases |
| xmapExon | Linking to X:MAP browser |
| xmapGene | Linking to X:MAP browser |
| xmapProbeset | Linking to X:MAP browser |
| xmapTranscript | Linking to X:MAP browser |
| [,PC-method | Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |
| [<-,PC-method | Class "PC" represents the result of a simple pairwise comparison between two groups of arrays |