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| CAMP | Genotype data from the Childhood Asthma Management Program (CAMP) |
| checkMarkers | Basic data quality checks for markers |
| fbat | Family-Based Association Tests |
| geneSet2Ped | Translate a geneSet object to a ped matrix |
| pedAFreq | get allele frequencies |
| pedFlagHomo | flag homo/heterozygotes |
| pedGFreq | get genotype frequencies |
| pedHardyWeinberg | Test Hardy-Weinberg equilibrium for each marker based on parental data |
| summaryPvalue | summarize the test statistics and p-values |
| viewFlagHomo | flag homo/heterozygotes for specified marker |
| viewHW | View allele frequencies, Hardy-Weinberg equilibrium test statistics for specified marker |
| viewstat | view statistics for a marker |