| oGtypeExSet-class {GGtools} | R Documentation |
Experimental class for combining oligo SnpCallSet with ExpressionSet
Objects can be created by calls of the form new("oGtypeExSet",
snpCalls=list(), dbConns=list(), x)
where x is an ExpressionSet instance.
snpCalls:"list" named
list of SnpCallSet instances dbConns:"list" list
of SQLite connections for SNP annotation structures assayData:"AssayData" from expression data phenoData:"AnnotatedDataFrame" ~~ featureData:"AnnotatedDataFrame" ~~ experimentData:"MIAME" ~~ annotation:"character" ~~ .__classVersion__:"Versions" ~~
Class ExpressionSet-class, directly.
Class eSet-class, by class "ExpressionSet", distance 2.
Class VersionedBiobase-class, by class "ExpressionSet", distance 3.
Class Versioned-class, by class "ExpressionSet", distance 4.
No methods defined with class "oGtypeExSet" in the signature.
addAnno, getSNPindices, and tx.rsnum need further development.
VJ Carey <stvjc@channing.harvard.edu>
# use new("oGtypeExSet", snpCalls=list(Nsp=nspCalls, Sty=styCalls),
# dbConns=list(), x3pSet)
showClass("oGtypeExSet")