| SNPperMeta-class {RSNPper} | R Documentation |
gives immediate access to location and allele, methods extract material on allele frequencies in different populations, and relationships to particular mRNAs/genes.
Objects can be created by calls of the form new("SNPperMeta", ...).
The extend matrix (so that colnames are propagated).
.Data:"matrix" see example popDetails:"data.frame"
information on populations that have been genotyped for reference geneDetails:"data.frame" information
on mRNAs (typically) near the SNP; putative SNP roles (in Promoter,
3' UTR, or Exon) are often denotedsubmitters:"ANY" unprocessed
XML on submitter identity.
Class "matrix", from data part.
Class "structure", by class "matrix".
Class "array", by class "matrix".
Class "vector", by class "matrix", with explicit coerce.
Class "vector", by class "matrix", with explicit coerce.
popDetails, geneDetails, submitters functions are available.
VJ Carey <stvjc@channing.harvard.edu>
if (interactive()) {
lkc = SNPinfo("6060535")
lkc
popDetails(lkc)
geneDetails(lkc)
lkg = geneInfo("CPNE1")
lkg
dim(allGeneMeta(lkg))
}