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| bait | A function that obtains the bait protein from the IntAct Interactions |
| bait,intactInteraction-method | Class "intactInteraction" |
| bait,interactionEntry-method | Class "interactionEntry" |
| complexEntry-class | Class "complexEntry" |
| complexes | A function that obtains the complex information from the IntAct Curated Protein Complexes |
| complexes,complexEntry-method | Class "complexEntry" |
| eListHandler | xmlEventParse handlers for MIF XML documents from EBI intact |
| iListHandler | xmlEventParse handlers for MIF XML documents from EBI intact |
| initialize,intactHyperGraph-method | Class "intactHyperGraph" |
| intactComplex-class | Class "intactComplex" |
| intactGraph-class | Class "intactGraph" |
| intactHyperGraph-class | Class "intactHyperGraph" |
| intactInteraction-class | Class "intactInteraction" |
| intactXML2Graph | A function that takes a vector of IntAct XML file names and converts them to graph objects. |
| interactionEntry-class | Class "interactionEntry" |
| interactions | A function that obtains the interaction information from the IntAct repository. |
| interactions,interactionEntry-method | Class "interactionEntry" |
| interactors | A function that obtains the interactors either in a binary interaction or a complex co-membership interaction. |
| interactors,complexEntry-method | Class "complexEntry" |
| interactors,interactionEntry-method | Class "interactionEntry" |
| list2Matrix | A function that takes a named list representation of a bipartite graph and transforms it into a matrix representation. |
| organismName | A method to obtain all the unique organism names from the PSI-MI 2.5 XML files upon which the data is based |
| organismName,interactionEntry-method | Class "interactionEntry" |
| prey | A function that obtains the prey protein from the IntAct Interactions |
| prey,intactInteraction-method | Class "intactInteraction" |
| prey,interactionEntry-method | Class "interactionEntry" |
| psi25complex | parser for PSI-MI 2.5 XML documents from EBI intact |
| psi25interaction | parser for PSI-MI 2.5 XML documents from EBI intact |
| releaseDate | A method to return the release date of the PSI-MI 2.5 XML file |
| releaseDate,interactionEntry-method | Class "interactionEntry" |
| show,complexEntry-method | Class "complexEntry" |
| show,intactComplex-method | Class "intactComplex" |
| show,intactGraph-method | Class "intactGraph" |
| show,intactHyperGraph-method | Class "intactHyperGraph" |
| show,intactInteraction-method | Class "intactInteraction" |
| show,interactionEntry-method | Class "interactionEntry" |
| taxId | A method to return all the unique taxonomy IDs indexing the unique organisms upon which the data is based |
| taxId,interactionEntry-method | Class "interactionEntry" |
| translateIntactID | A function that translates the IntAct accession codes for molecules to other common identifiers. |
| translateIntactID,intactGraph-method | Class "intactGraph" |
| translateIntactID,intactHyperGraph-method | Class "intactHyperGraph" |