| psi25interaction {Rintact} | R Documentation |
The PSI-MI 2.5 XML format is used by EBI IntAct database to record
protein-protein interaction data and protein complex data.
psi25interaction is the parser for interaction data and
psi25complex is the parser for complex data.
psi25interaction(intactFile) psi25complex(intactFile)
intactFile |
character, file name or URL of the XML document |
psi25interaction returns a list of interactionEntry
objects, each represents one entry in the XML document.
psi25complex returns an complexEntry object, which
represents the data from one XML document.
Nianhua Li
The IntAct Database http://www.ebi.ac.uk/intact/site/contents/downloads.jsf.
interactionEntry-class, complexEntry-class
# parse complex data
fn <- system.file("PSI25XML/complexSample.xml", package="Rintact")
complexData <- psi25complex(fn)
complexData
# parse interaction data
fn <- system.file("PSI25XML/interactionSample.xml", package="Rintact")
interactionData <- psi25interaction(fn)
interactionData