| SMAPObservations-class {SMAP} | R Documentation |
Holds observed microarray intensity ratios and clone annotations for the SMAP package.
Objects can be created by calls of the form
new("SMAPObservations", value, chromosome, startPosition,
endPosition, name, reporterId). You can also use the convenience
function SMAPObservations.
value:"numeric" Microarray
intensity ratios.chromosome:"character"
Associated chromosomes for the observations.startPosition:"numeric"
Associated start positions for the observations.endPosition:"numeric"
Associated end positions for the observations.reporterId:"character"
Identifiers of the observations, e.g., probe ids.name:"character" An identifier
of the observation set.noObservations:"numeric" The
number of observations in the set.signature(object = "SMAPObservations"): Returns
the values of the observations.signature(object = "SMAPObservations"):
Returns the chromosome annotations of the observations.signature(object = "SMAPObservations"):
Returns the start positions of the observations.signature(object = "SMAPObservations"):
Returns the end positions of the observations.signature(object = "SMAPObservations"):
Returns the identifiers of the observations.signature(object = "SMAPObservations"): Returns
the name of the observation set.signature(object = "SMAPObservations"):
Returns the number of observations in the set.signature(.Object = "SMAPObservations"):
Creates an instance.signature(x = "SMAPObservations", y = "missing"):
A plot method for the observations.signature(x = "SMAPPObservations"): Creates a new
object of class SMAPObservations with extracted elements as
specified by the indices provided.Robin Andersson, robin.andersson@lcb.uu.se
Andersson, R., Bruder, C. E. G., Piotrowski, A., Menzel, U., Nord, H., Sandgren, J., Hvidsten, T. R., Diaz de Stahl, T., Dumanski, J. P., Komorowski, J., A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling, submitted