| HmmSnpCallSet-class {VanillaICE} | R Documentation |
Objects can be created by calls of the form new("HmmSnpCallSet",
assayData, phenoData, featureData, experimentData, annotation,
chromosomeAnnotation, calls, callsConfidence, copyNumber, cnConfidence,
...).
probabilityCalledHomIfNormal:"numeric" probabilityCalledHetIfLoh:"numeric" predictions:"matrix" distance:"logical" initialStateProbability:"NullOrNumeric" transitionProbability:"NullOrNumericOrMatrix" emissionProbability:"NullOrMatrix" likelihood:"NullOrMatrix" chromosomeArm:"character" callsIce:"logical"stateNames:"character" chromosomeAnnotation:"data.frame" assayData:"AssayData" phenoData:"AnnotatedDataFrame" featureData:"AnnotatedDataFrame" experimentData:"MIAME" annotation:"character" .__classVersion__:"Versions"
Class hSet-class, directly.
Class oligoSnpSet-class, by class "hSet", distance 2.
Class SnpCallSet-class, by class "hSet", distance 3.
Class SnpCopyNumberSet-class, by class "hSet", distance 3, with explicit coerce.
Class SnpCallSet-class, by class "hSet", distance 4.
Class class.eSet, by class "hSet", distance 5.
Class VersionedBiobase-class, by class "hSet", distance 6.
Class Versioned-class, by class "hSet", distance 7.
Class SnpCopyNumberSet-class, by class "hSet", distance 4, with explicit coerce.
Class class.eSet, by class "hSet", distance 5, with explicit coerce.
Class VersionedBiobase-class, by class "hSet", distance 6, with explicit coerce.
Class Versioned-class, by class "hSet", distance 7, with explicit coerce.
signature(x = "HmmSnpCallSet") signature(object =
"HmmSnpCallSet")signature(object = "HmmSnpCallSet") signature(from = "AnnotatedSnpSet", to = "HmmSnpCallSet") signature(object = "HmmSnpCallSet") signature(object = "HmmSnpCallSet") signature(object = "HmmSnpCallSet") signature(object = "HmmSnpCallSet") signature(object = "HmmSnpCallSet") signature(object = "HmmSnpCallSet") signature(object = "HmmSnpCallSet", value = "ANY") signature(object = "HmmSnpCallSet") Robert Scharpf
HmmSnpSet-class,
HmmSnpCopyNumberSet-class,
hSet-class
showClass("HmmSnpCallSet")