| HmmSnpCopyNumberSet-class {VanillaICE} | R Documentation |
Objects can be created by calls of the form
new("HmmSnpCopyNumberSet", assayData, phenoData, featureData,
experimentData, annotation, chromosomeAnnotation, calls,
callsConfidence, copyNumber, cnConfidence, ...).
locationCopyNumber:"numeric" scaleCopyNumber:"NullOrMatrix" log2:"logical" predictions:"matrix" distance:"logical" initialStateProbability:"NullOrNumeric" transitionProbability:"NullOrNumericOrMatrix" emissionProbability:"NullOrMatrix" likelihood:"NullOrMatrix" chromosomeArm:"character" stateNames:"character" chromosomeAnnotation:"data.frame" assayData:"AssayData" phenoData:"AnnotatedDataFrame" featureData:"AnnotatedDataFrame" experimentData:"MIAME" annotation:"character" .__classVersion__:"Versions"copyNumberIce:"logical"
Class hSet-class, directly.
Class AnnotatedSnpSet-class, by class "hSet", distance 2.
Class AnnotatedSnpCallSet-class, by class "hSet", distance 3.
Class AnnotatedSnpCopyNumberSet-class, by class "hSet", distance 3, with explicit coerce.
Class SnpCallSet-class, by class "hSet", distance 4.
Class class.eSet, by class "hSet", distance 5.
Class VersionedBiobase-class, by class "hSet", distance 6.
Class Versioned-class, by class "hSet", distance 7.
Class SnpCopyNumberSet-class, by class "hSet", distance 4, with explicit coerce.
Class class.eSet, by class "hSet", distance 5, with explicit coerce.
Class VersionedBiobase-class, by class "hSet", distance 6, with explicit coerce.
Class Versioned-class, by class "hSet", distance 7, with explicit coerce.
signature(x = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(from = "AnnotatedSnpSet", to =
"HmmSnpCopyNumberSet")signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet", value = "ANY") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") signature(object = "HmmSnpCopyNumberSet") Robert Scharpf
HmmSnpSet-class,
HmmSnpCallSet-class
hSet-class
showClass("HmmSnpCopyNumberSet")