| HmmSnpSet-class {VanillaICE} | R Documentation |
Objects can be created by calls of the form new("HmmSnpSet",
assayData, featureData, phenoData, experimentData, annotation, calls,
callsConfidence, copyNumber, cnConfidence, predictions, scaleCopyNumber,
probabilityCalledHomIfNormal, probabilityCalledHetIfLoh, log2,
locationCopyNumber, stateNames, ...).
locationCopyNumber:"numeric" scaleCopyNumber:"NullOrMatrix" log2:"logical" predictions:"matrix" distance:"logical" initialStateProbability:"NullOrNumeric" transitionProbability:"NullOrNumericOrMatrix" emissionProbability:"NullOrMatrix" likelihood:"NullOrMatrix" chromosomeArm:"character" callsIce:"logical" copyNumberIce:"logical" stateNames:"character" chromosomeAnnotation:"data.frame" assayData:"AssayData" phenoData:"AnnotatedDataFrame" featureData:"AnnotatedDataFrame" experimentData:"MIAME" annotation:"character" .__classVersion__:"Versions" probabilityCalledHomIfNormal:"numeric" probabilityCalledHetIfLoh:"numeric"
Class HmmSnpCopyNumberSet-class, directly.
Class HmmSnpCallSet-class, directly.
Class hSet-class, by class "HmmSnpCopyNumberSet", distance 2.
Class AnnotatedSnpSet-class, by class "HmmSnpCopyNumberSet", distance 3.
Class AnnotatedSnpCallSet-class, by class "HmmSnpCopyNumberSet", distance 4.
Class AnnotatedSnpCopyNumberSet-class, by class "HmmSnpCopyNumberSet", distance 4, with explicit coerce.
Class SnpCallSet-class, by class "HmmSnpCopyNumberSet", distance 5.
Class class.eSet, by class "HmmSnpCopyNumberSet", distance 6.
Class VersionedBiobase-class, by class "HmmSnpCopyNumberSet", distance 7.
Class Versioned-class, by class "HmmSnpCopyNumberSet", distance 8.
Class SnpCopyNumberSet-class, by class "HmmSnpCopyNumberSet", distance 5, with explicit coerce.
Class class.eSet, by class "HmmSnpCopyNumberSet", distance 6, with explicit coerce.
Class VersionedBiobase-class, by class "HmmSnpCopyNumberSet", distance 7, with explicit coerce.
Class Versioned-class, by class "HmmSnpCopyNumberSet", distance 8, with explicit coerce.
Class hSet-class, by class "HmmSnpCallSet", distance 2.
Class AnnotatedSnpSet-class, by class "HmmSnpCallSet", distance 3.
Class AnnotatedSnpCallSet-class, by class "HmmSnpCallSet", distance 4.
Class AnnotatedSnpCopyNumberSet-class, by class "HmmSnpCallSet", distance 4, with explicit coerce.
Class SnpCallSet-class, by class "HmmSnpCallSet", distance 5.
Class class.eSet, by class "HmmSnpCallSet", distance 6.
Class VersionedBiobase-class, by class "HmmSnpCallSet", distance 7.
Class Versioned-class, by class "HmmSnpCallSet", distance 8.
Class SnpCopyNumberSet-class, by class "HmmSnpCallSet", distance 5, with explicit coerce.
Class class.eSet, by class "HmmSnpCallSet", distance 6, with explicit coerce.
Class VersionedBiobase-class, by class "HmmSnpCallSet", distance 7, with explicit coerce.
Class Versioned-class, by class "HmmSnpCallSet", distance 8, with explicit coerce.
signature(x = "HmmSnpSet"): ... signature(x = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(from = "AnnotatedSnpSet", to =
"HmmSnpSet"): ... signature(object = "HmmSnpSet"):
... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(.Object = "HmmSnpSet"):
Resets the package attribute from ICE (DEPRECATED package name)
to VanillaICEsignature(.Object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet", value = "matrix"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... signature(object = "HmmSnpSet"): ... Robert Scharpf
HmmSnpCopyNumberSet-class,
HmmSnpCallSet-class
hSet-class
showClass("HmmSnpSet")